Variant report

Variant	rs114187270
Chromosome Location	chr3:112893869-112893870
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv877346	chr3:112893640-112938683	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112889000-112896600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:112889200-112898000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:112889400-112894200	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:112889400-112898200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:112893000-112894600	Enhancers	Colon Smooth Muscle	Colon
6	chr3:112893200-112894400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:112893200-112894600	Enhancers	Fetal Lung	lung
8	chr3:112893200-112894600	Enhancers	Ovary	ovary
9	chr3:112893200-112894600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr3:112893400-112894000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:112893400-112894400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:112893600-112894200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:112893600-112894600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:112893800-112894000	Enhancers	NHDF-Ad	bronchial
15	chr3:112893800-112894200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:112893800-112894400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr3:112893800-112894400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:112893800-112894400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:112893800-112894400	Enhancers	Stomach Smooth Muscle	stomach
20	chr3:112893800-112894600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr3:112893800-112894600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr3:112893800-112894600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:112893800-112894600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr3:112893800-112894600	Enhancers	Fetal Stomach	stomach
25	chr3:112893800-112894800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links