Variant report

Variant	rs114219089
Chromosome Location	chr15:31774738-31774739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31768996..31771688-chr15:31773371..31775681,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1803983	chr15:31760986-31776503	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv1817856	chr15:31772875-31776398	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1798284	chr15:31772875-31776503	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1840109	chr15:31772875-31776503	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1824097	chr15:31772875-31778703	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv827281	chr15:31773227-31779565	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv827282	chr15:31773680-31778948	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3436746	chr15:31773760-31777958	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1822934	chr15:31773865-31776398	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3324341	chr15:31774110-31777508	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3388036	chr15:31774660-31777358	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31758200-31774800	Weak transcription	Gastric	stomach
2	chr15:31758200-31775400	Weak transcription	Pancreas	Pancrea
3	chr15:31765600-31775200	Weak transcription	Brain Anterior Caudate	brain
4	chr15:31765600-31779200	Weak transcription	Brain Angular Gyrus	brain
5	chr15:31765800-31775400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:31766000-31776400	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:31766200-31775000	Weak transcription	Left Ventricle	heart
8	chr15:31768400-31774800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:31769000-31775200	Weak transcription	Right Atrium	heart
10	chr15:31769000-31776400	Weak transcription	Brain Substantia Nigra	brain
11	chr15:31772200-31775000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:31772200-31775200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:31772600-31774800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr15:31772600-31774800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr15:31773000-31774800	Weak transcription	Right Ventricle	heart
16	chr15:31773200-31775000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:31773400-31774800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr15:31773800-31775200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr15:31774000-31775000	Bivalent Enhancer	Fetal Thymus	thymus
20	chr15:31774200-31774800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:31774200-31775200	Bivalent Enhancer	Fetal Brain Male	brain
22	chr15:31774200-31775400	Strong transcription	Brain Cingulate Gyrus	brain
23	chr15:31774400-31774800	Enhancers	Primary T cells from cord blood	blood
24	chr15:31774400-31774800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:31774400-31774800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:31774400-31775000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
27	chr15:31774400-31775000	Flanking Active TSS	Fetal Brain Female	brain
28	chr15:31774400-31775000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
29	chr15:31774400-31775200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:31774400-31775200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:31774400-31775200	Enhancers	Esophagus	oesophagus
32	chr15:31774400-31775400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr15:31774600-31775000	Bivalent Enhancer	Primary B cells from cord blood	blood
34	chr15:31774600-31775000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
35	chr15:31774600-31775200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
36	chr15:31774600-31775400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
37	chr15:31774600-31775400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr15:31774600-31775400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:31774600-31775400	Bivalent Enhancer	Colonic Mucosa	Colon
40	chr15:31774600-31775800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr15:31774600-31776600	Bivalent/Poised TSS	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links