Variant report

Variant	rs114329352
Chromosome Location	chr19:55713885-55713886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:55712362..55714079-chr19:55717109..55720117,3	K562	blood:
2	chr19:55713511..55716413-chr19:55771406..55774193,2	MCF-7	breast:
3	chr19:55711425..55714079-chr19:55726624..55728744,2	K562	blood:
4	chr19:55710077..55713946-chr19:55715041..55719503,7	K562	blood:
5	chr19:55711944..55714084-chr19:55716574..55718347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267649	Chromatin interaction
ENSG00000080031	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv960874	chr19:55713386-55721747	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3438350	chr19:55713797-55716493	Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55691200-55718200	Weak transcription	Right Atrium	heart
2	chr19:55691600-55718200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:55691800-55717600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:55692600-55717000	Strong transcription	Duodenum Mucosa	Duodenum
5	chr19:55701200-55718000	Weak transcription	A549	lung
6	chr19:55701400-55718400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:55702600-55714800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr19:55703000-55717800	Weak transcription	Hela-S3	cervix
9	chr19:55704200-55718200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr19:55704800-55717400	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr19:55705000-55714200	Strong transcription	HepG2	liver
12	chr19:55705000-55717000	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr19:55707200-55718400	Weak transcription	Brain Angular Gyrus	brain
14	chr19:55707800-55715600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:55707800-55717200	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr19:55708800-55720600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr19:55709400-55715800	Weak transcription	Spleen	Spleen
18	chr19:55710400-55718200	Weak transcription	Stomach Mucosa	stomach
19	chr19:55711600-55717200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:55711800-55718200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr19:55712000-55718000	Weak transcription	Colonic Mucosa	Colon
22	chr19:55712000-55718000	Weak transcription	Pancreas	Pancrea
23	chr19:55712800-55718000	Weak transcription	NHLF	lung
24	chr19:55713000-55715200	Weak transcription	Fetal Stomach	stomach
25	chr19:55713600-55715400	Weak transcription	Fetal Intestine Large	intestine
26	chr19:55713800-55715200	Weak transcription	K562	blood
27	chr19:55713800-55716000	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links