Variant report

Variant	rs1144519
Chromosome Location	chr10:28624681-28624682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1144516	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1144517	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1144518	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1249331	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1249335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1249336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1249337	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1249338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1249339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1249341	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1249342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1262025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1265859	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1762150	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1762158	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28618800-28626600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:28621600-28625600	Enhancers	Fetal Thymus	thymus
3	chr10:28623200-28625600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:28624000-28626000	Enhancers	Primary B cells from cord blood	blood
5	chr10:28624200-28625000	Weak transcription	Thymus	Thymus
6	chr10:28624200-28625400	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:28624200-28626200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:28624200-28626400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr10:28624200-28626400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:28624400-28625000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:28624400-28625000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:28624400-28625400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:28624400-28625400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:28624400-28626400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:28624400-28626400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:28624400-28626800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:28624400-28626800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr10:28624400-28628200	Weak transcription	Placenta	Placenta
19	chr10:28624600-28625000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:28624600-28625000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:28624600-28625000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:28624600-28625000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:28624600-28625200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr10:28624600-28626400	Enhancers	Primary T cells from cord blood	blood
25	chr10:28624600-28626600	Enhancers	Primary T helper cells PMA-I stimulated	--

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