Variant report

Variant	rs114529525
Chromosome Location	chr7:63016145-63016146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:63016102-63016152	GM12878	blood:	n/a
2	chr7:63016104-63016154	HMEC	breast:	n/a
3	chr7:63016104-63016154	GM19239	blood:	n/a
4	chr7:63016104-63016154	GM12892	blood:	n/a
5	chr7:63016104-63016154	HRPEpiC	eye:	n/a
6	chr7:63016102-63016152	HEK293	kidney:	embryo
7	chr7:63016104-63016154	AG04449	skin:	fetal
8	chr7:63016104-63016154	PFSK-1	brain:	n/a
9	chr7:63016102-63016152	HEEpiC	esophagus:	n/a
10	chr7:63016104-63016154	HEK293	kidney:	embryo
11	chr7:63016102-63016152	HIPEpiC	eye:	n/a
12	chr7:63016104-63016154	GM12878	blood:	n/a
13	chr7:63016102-63016152	NT2-D1	testis:	n/a
14	chr7:63016102-63016152	ProgFib	skin:	n/a
15	chr7:63016104-63016154	BE2_C	brain:	n/a
16	chr7:63016102-63016152	SK-N-SH	brain:	n/a
17	chr7:63016104-63016154	SAEC	small airway:	n/a
18	chr7:63016104-63016154	SKMC	muscle:	n/a
19	chr7:63016104-63016154	K562	blood:	n/a
20	chr7:63016104-63016154	ovcar-3	ovarian:	n/a
21	chr7:63016102-63016152	Caco-2	colon:	n/a
22	chr7:63016102-63016152	BE2_C	brain:	n/a
23	chr7:63016102-63016152	MCF10A-Er-Src	breast:	n/a
24	chr7:63016104-63016154	NHDF-neo	bronchial:	n/a
25	chr7:63016104-63016154	SK-N-SH	brain:	n/a
26	chr7:63016104-63016154	Caco-2	colon:	n/a
27	chr7:63016104-63016154	HNPCEpiC	eye:	n/a
28	chr7:63016104-63016154	ECC-1	luminal epithelium:	n/a
29	chr7:63016104-63016154	NH-A	brain:	n/a
30	chr7:63016102-63016152	HCPEpiC	choroid plexus:	n/a
31	chr7:63016102-63016152	AG09309	skin:	n/a
32	chr7:63016104-63016154	AoSMC	blood vessel:	n/a
33	chr7:63016102-63016152	Hepatocyte	liver:	n/a
34	chr7:63016102-63016152	PANC-1	pancreas:	n/a
35	chr7:63016102-63016152	NHDF-neo	bronchial:	n/a
36	chr7:63016104-63016154	IMR90	lung:	fetal
37	chr7:63016104-63016154	H1-hESC	embryonic stem cell:	embryo
38	chr7:63016104-63016154	Hela-S3	cervix:	n/a
39	chr7:63016104-63016154	MCF10A-Er-Src	breast:	n/a
40	chr7:63016102-63016152	HNPCEpiC	eye:	n/a
41	chr7:63016102-63016152	MCF-7	breast:	n/a
42	chr7:63016102-63016152	CMK	blood:	n/a
43	chr7:63016102-63016152	GM19239	blood:	n/a
44	chr7:63016104-63016154	AG04450	lung:	fetal
45	chr7:63016102-63016152	Jurkat	blood:	n/a
46	chr7:63016104-63016154	AG10803	skin:	n/a
47	chr7:63016104-63016154	AG09319	gingival:	n/a
48	chr7:63016102-63016152	U87	brain:	n/a
49	chr7:63016104-63016154	PrEC	prostate:	n/a
50	chr7:63016104-63016154	SK-N-MC	brain:	n/a

No data

Variant related genes	Relation type
SLC29A4P2	CpG island

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478284	chr7:62531504-63351786	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
2	esv3478287	chr7:62531504-63351786	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1023293	chr7:62619341-63109895	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv1016602	chr7:62623431-63339807	ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
5	nsv888230	chr7:62705018-63294907	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
6	nsv888248	chr7:62910947-63020800	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a
7	nsv888249	chr7:62910947-63109270	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1032341	chr7:62925821-63112016	Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
9	nsv427784	chr7:62930318-63135087	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1023394	chr7:62933472-63147404	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
11	nsv888250	chr7:62935337-63131060	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
12	nsv888251	chr7:62939356-63078112	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv888252	chr7:62939356-63131060	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
14	esv32550	chr7:62985473-63249879	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
15	nsv888253	chr7:62985573-63089411	Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
16	nsv482607	chr7:62988179-63146258	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
17	esv1812304	chr7:63013901-63100502	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
18	esv3393029	chr7:63015542-63018090	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
19	esv3430093	chr7:63015817-63018015	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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