Variant report

Variant	rs114539592
Chromosome Location	chr5:54103984-54103985
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:54102068..54104903-chr5:54105238..54107823,3	K562	blood:
2	chr5:54098223..54100100-chr5:54101975..54104817,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2754136	chr5:54083387-54107727	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv19821	chr5:54103757-54104736	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54103200-54104000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:54103200-54104000	Enhancers	Fetal Intestine Small	intestine
3	chr5:54103200-54104000	Enhancers	HMEC	breast
4	chr5:54103200-54104000	Enhancers	NHDF-Ad	bronchial
5	chr5:54103200-54104000	Enhancers	NHEK	skin
6	chr5:54103200-54104200	Enhancers	Stomach Mucosa	stomach
7	chr5:54103200-54104200	Enhancers	Hela-S3	cervix
8	chr5:54103200-54104200	Enhancers	NHLF	lung
9	chr5:54103200-54104600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:54103200-54104800	Enhancers	HUVEC	blood vessel
11	chr5:54103400-54104000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:54103400-54104000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:54103400-54104000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:54103600-54104000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:54103600-54104000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:54103600-54104000	Enhancers	Aorta	Aorta
17	chr5:54103600-54104000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:54103600-54104000	Enhancers	Fetal Intestine Large	intestine
19	chr5:54103600-54104000	Enhancers	NH-A	brain
20	chr5:54103600-54104200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:54103600-54104200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr5:54103600-54104200	Enhancers	Placenta	Placenta
23	chr5:54103800-54104400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:54103800-54104400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr5:54103800-54104400	Enhancers	Lung	lung
26	chr5:54103800-54104800	Enhancers	Pancreas	Pancrea
27	chr5:54103800-54108200	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links