Variant report

Variant	rs114543584
Chromosome Location	chr22:30441946-30441947
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30431981..30436228-chr22:30436988..30442132,5	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv964619	chr22:30440663-30444496	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30423600-30447600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr22:30424800-30443000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr22:30425800-30442000	Weak transcription	Fetal Brain Female	brain
4	chr22:30426600-30443000	Weak transcription	Thymus	Thymus
5	chr22:30430200-30442800	Weak transcription	Spleen	Spleen
6	chr22:30430200-30449600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:30435000-30450600	Weak transcription	Gastric	stomach
8	chr22:30437000-30443400	Weak transcription	Esophagus	oesophagus
9	chr22:30438200-30448200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr22:30439600-30442200	Enhancers	Stomach Mucosa	stomach
11	chr22:30440600-30442800	Weak transcription	HepG2	liver
12	chr22:30440800-30444400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr22:30441000-30444400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr22:30441200-30442000	Enhancers	Fetal Muscle Trunk	muscle
15	chr22:30441200-30443000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr22:30441200-30443400	Weak transcription	Liver	Liver
17	chr22:30441200-30444600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr22:30441400-30450600	Weak transcription	Adipose Nuclei	Adipose
19	chr22:30441600-30443400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr22:30441600-30443400	Weak transcription	Fetal Muscle Leg	muscle
21	chr22:30441800-30443000	Weak transcription	Fetal Intestine Small	intestine
22	chr22:30441800-30443400	Weak transcription	Fetal Intestine Large	intestine

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