Variant report

Variant	rs114564912
Chromosome Location	chr6:34352480-34352481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34341570..34343991-chr6:34351093..34353761,2	K562	blood:
2	chr6:34330571..34332725-chr6:34351916..34353996,2	K562	blood:
3	chr6:34350156..34353339-chr6:34359370..34361777,7	MCF-7	breast:
4	chr6:34346665..34350255-chr6:34350707..34354463,4	MCF-7	breast:
5	chr6:34292790..34296171-chr6:34350622..34353853,3	K562	blood:

Variant related genes	Relation type
ENSG00000272325	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1034978	chr6:34327526-34362187	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv981324	chr6:34351435-34360764	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34318200-34355800	Weak transcription	Brain Germinal Matrix	brain
2	chr6:34327800-34356400	Weak transcription	Hela-S3	cervix
3	chr6:34328600-34358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:34331000-34358400	Weak transcription	Aorta	Aorta
5	chr6:34331400-34353400	Weak transcription	Small Intestine	intestine
6	chr6:34331400-34353600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:34331600-34353600	Weak transcription	Fetal Intestine Large	intestine
8	chr6:34333600-34358000	Weak transcription	HMEC	breast
9	chr6:34335200-34354600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:34335600-34358800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:34337800-34359000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:34338000-34353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:34338200-34358600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:34338400-34353600	Weak transcription	Pancreas	Pancrea
15	chr6:34338400-34356600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:34339200-34358000	Weak transcription	NHEK	skin
17	chr6:34339400-34358000	Weak transcription	HUVEC	blood vessel
18	chr6:34340400-34358000	Weak transcription	Fetal Thymus	thymus
19	chr6:34342600-34355800	Weak transcription	Fetal Brain Female	brain
20	chr6:34342800-34353800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:34343000-34357600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:34343400-34356600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:34344000-34353800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:34345200-34358600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:34346600-34358400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:34346800-34353600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:34346800-34353600	Weak transcription	Spleen	Spleen
28	chr6:34346800-34353800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:34346800-34356400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:34349000-34358800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:34349200-34355000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:34350200-34353800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:34350400-34352600	Enhancers	Fetal Kidney	kidney
34	chr6:34350400-34352800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:34350400-34354200	Enhancers	Lung	lung
36	chr6:34350600-34359000	Weak transcription	Esophagus	oesophagus
37	chr6:34350800-34352800	Enhancers	Osteobl	bone
38	chr6:34351000-34352800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr6:34351000-34352800	Enhancers	Brain Anterior Caudate	brain
40	chr6:34351000-34352800	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:34351000-34353000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:34351000-34353000	Enhancers	Brain Angular Gyrus	brain
43	chr6:34351200-34352600	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:34351200-34352600	Enhancers	Fetal Brain Male	brain
45	chr6:34351200-34352600	Enhancers	Fetal Heart	heart
46	chr6:34351200-34352600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr6:34351200-34352600	Genic enhancers	K562	blood
48	chr6:34351200-34352800	Enhancers	Adipose Nuclei	Adipose
49	chr6:34351200-34353000	Enhancers	Duodenum Mucosa	Duodenum
50	chr6:34351200-34353000	Enhancers	Right Atrium	heart

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