Variant report

Variant	rs114565163
Chromosome Location	chr1:113799087-113799088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18293	chr1:113375437-113852815	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1007045	chr1:113425222-113839910	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv427719	chr1:113570229-114078388	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv3354454	chr1:113797629-113802027	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3327211	chr1:113798654-113801402	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113794600-113799600	Enhancers	Fetal Intestine Small	intestine
2	chr1:113796000-113799200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:113796000-113799200	Enhancers	Liver	Liver
4	chr1:113796000-113799400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:113796000-113799600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:113796200-113799400	Enhancers	Stomach Mucosa	stomach
7	chr1:113796600-113799400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:113796600-113799600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:113797000-113799600	Enhancers	Fetal Lung	lung
10	chr1:113797600-113799200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:113797800-113799200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:113798000-113799200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr1:113798000-113799200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:113798000-113799400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:113798200-113799600	Enhancers	Placenta	Placenta
16	chr1:113798400-113799400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:113798400-113799400	Enhancers	Fetal Stomach	stomach
18	chr1:113798600-113799200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:113798600-113799200	Enhancers	Pancreas	Pancrea
20	chr1:113798600-113799400	Enhancers	Primary T cells from cord blood	blood
21	chr1:113798600-113799400	Enhancers	Fetal Kidney	kidney
22	chr1:113798800-113799200	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:113798800-113799400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr1:113798800-113817800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:113799000-113799200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:113799000-113799200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:113799000-113799200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
28	chr1:113799000-113799200	Enhancers	Small Intestine	intestine
29	chr1:113799000-113799400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr1:113799000-113799400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr1:113799000-113799400	Bivalent Enhancer	HSMMtube	muscle
32	chr1:113799000-113799600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr1:113799000-113799600	Enhancers	Fetal Intestine Large	intestine

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