Variant report

Variant	rs114656224
Chromosome Location	chr1:93794002-93794003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93792575..93795047-chr1:93809728..93812578,2	K562	blood:
2	chr1:93793661..93797290-chr1:93805926..93809295,5	MCF-7	breast:
3	chr1:93779027..93781639-chr1:93793756..93796548,2	K562	blood:
4	chr1:93793462..93796127-chr1:93796578..93799399,2	MCF-7	breast:
5	chr1:93788135..93790558-chr1:93790563..93794181,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMED5-1	chr1:93792580-93803825	NONHSAT004520

Variant related genes	Relation type
ENSG00000223745	Chromatin interaction
ENSG00000117505	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523951	chr1:93793851-93795163	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93751600-93794600	Weak transcription	Brain Substantia Nigra	brain
2	chr1:93753000-93803600	Weak transcription	Adipose Nuclei	Adipose
3	chr1:93753200-93806400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:93755400-93802600	Weak transcription	Primary B cells from cord blood	blood
5	chr1:93755400-93803200	Weak transcription	Fetal Thymus	thymus
6	chr1:93755600-93803400	Weak transcription	Fetal Intestine Large	intestine
7	chr1:93755600-93804200	Weak transcription	Brain Anterior Caudate	brain
8	chr1:93755800-93801400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:93756000-93803800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:93765800-93809800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:93767800-93801400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:93768600-93803000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:93772600-93806000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:93779600-93804000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:93783000-93803400	Weak transcription	Left Ventricle	heart
16	chr1:93783800-93801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:93784400-93804000	Weak transcription	Thymus	Thymus
18	chr1:93786200-93803800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr1:93789000-93797200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr1:93789000-93803800	Weak transcription	Placenta	Placenta
21	chr1:93789200-93810200	Weak transcription	Esophagus	oesophagus
22	chr1:93789600-93800400	Weak transcription	Primary T cells from cord blood	blood
23	chr1:93789600-93806600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr1:93790400-93794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:93790400-93800200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:93790600-93794200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr1:93790600-93794400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:93790600-93804600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:93790800-93794200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr1:93790800-93803400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:93790800-93810000	Weak transcription	Fetal Intestine Small	intestine
32	chr1:93791000-93794200	Weak transcription	NH-A	brain
33	chr1:93791000-93794400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr1:93791000-93794600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr1:93791000-93801600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:93791000-93802200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:93791200-93794400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:93791200-93802800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:93791200-93803800	Weak transcription	A549	lung
40	chr1:93791400-93794200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:93791400-93794200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:93791600-93794200	Weak transcription	Osteobl	bone
43	chr1:93791800-93797200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:93791800-93797200	Weak transcription	Stomach Mucosa	stomach
45	chr1:93792200-93794400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr1:93793400-93795000	Enhancers	HSMMtube	muscle
47	chr1:93793600-93796000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:93793800-93795000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr1:93794000-93794400	Enhancers	Fetal Brain Male	brain
50	chr1:93794000-93794600	Enhancers	NHDF-Ad	bronchial

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