Variant report

Variant	rs11466345
Chromosome Location	chr19:41843461-41843462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41837922..41839964-chr19:41843309..41846016,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11879435	0.81[JPT][hapmap]
rs11881940	0.81[JPT][hapmap]
rs12974420	0.81[JPT][hapmap]
rs12980942	0.81[JPT][hapmap]
rs12984160	0.81[JPT][hapmap]
rs12985339	0.81[JPT][hapmap]
rs1946613	0.80[JPT][hapmap]
rs2053086	0.81[JPT][hapmap]
rs2241718	0.81[JPT][hapmap]
rs2304231	0.81[JPT][hapmap]
rs2304232	0.81[JPT][hapmap]
rs3760660	0.81[JPT][hapmap]
rs4591267	0.81[JPT][hapmap]
rs8103839	0.81[JPT][hapmap]
rs8105901	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911769	chr19:41813676-41845801	Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41818600-41854800	Strong transcription	Dnd41	blood
2	chr19:41832400-41856000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr19:41833400-41846400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:41834200-41856600	Weak transcription	Brain Anterior Caudate	brain
5	chr19:41834200-41856800	Weak transcription	Fetal Kidney	kidney
6	chr19:41834400-41854800	Weak transcription	Small Intestine	intestine
7	chr19:41834800-41845200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr19:41834800-41845600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:41834800-41847600	Weak transcription	Brain Hippocampus Middle	brain
10	chr19:41834800-41849400	Weak transcription	Fetal Lung	lung
11	chr19:41834800-41855600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr19:41834800-41856800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr19:41834800-41856800	Weak transcription	Brain Substantia Nigra	brain
14	chr19:41835000-41845200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr19:41835000-41845600	Weak transcription	HSMM	muscle
16	chr19:41835000-41847600	Weak transcription	Gastric	stomach
17	chr19:41835000-41847800	Weak transcription	Pancreas	Pancrea
18	chr19:41835000-41854400	Strong transcription	Fetal Stomach	stomach
19	chr19:41835000-41856600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr19:41835000-41856800	Weak transcription	Brain Angular Gyrus	brain
21	chr19:41835200-41843600	Weak transcription	NH-A	brain
22	chr19:41835200-41846600	Weak transcription	HMEC	breast
23	chr19:41835200-41849400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr19:41835400-41845800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr19:41835400-41847600	Weak transcription	Colonic Mucosa	Colon
26	chr19:41835400-41847800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr19:41835600-41856000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:41836000-41855200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:41836200-41845200	Strong transcription	Osteobl	bone
30	chr19:41837200-41847600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr19:41837200-41847600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr19:41837200-41850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr19:41837400-41847600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr19:41837400-41847600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr19:41837800-41850200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr19:41837800-41855800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr19:41838200-41845000	Weak transcription	Colon Smooth Muscle	Colon
38	chr19:41838200-41847600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr19:41838200-41847600	Weak transcription	Right Ventricle	heart
40	chr19:41838200-41847800	Weak transcription	Stomach Mucosa	stomach
41	chr19:41838400-41844600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr19:41838400-41845200	Weak transcription	HepG2	liver
43	chr19:41838400-41846800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr19:41838400-41847600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr19:41838400-41847600	Weak transcription	Liver	Liver
46	chr19:41838400-41847600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr19:41838600-41844800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr19:41838600-41846600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr19:41838600-41846800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr19:41838600-41856600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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