Variant report

Variant	rs11466353
Chromosome Location	chr19:41839838-41839839
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41837922..41839964-chr19:41843309..41846016,2	K562	blood:
2	chr19:41838935..41840441-chr19:41859912..41861504,2	K562	blood:
3	chr19:41828482..41836150-chr19:41836490..41842395,12	K562	blood:
4	chr19:41839730..41841437-chr19:41843960..41846417,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000142046	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8179181	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911769	chr19:41813676-41845801	Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41818600-41854800	Strong transcription	Dnd41	blood
2	chr19:41832400-41856000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr19:41833400-41846400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:41834200-41842000	Genic enhancers	Placenta	Placenta
5	chr19:41834200-41842600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr19:41834200-41856600	Weak transcription	Brain Anterior Caudate	brain
7	chr19:41834200-41856800	Weak transcription	Fetal Kidney	kidney
8	chr19:41834400-41854800	Weak transcription	Small Intestine	intestine
9	chr19:41834600-41842600	Strong transcription	Thymus	Thymus
10	chr19:41834800-41840000	Genic enhancers	Primary monocytes fromperipheralblood	blood
11	chr19:41834800-41841400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr19:41834800-41845200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr19:41834800-41845600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr19:41834800-41847600	Weak transcription	Brain Hippocampus Middle	brain
15	chr19:41834800-41849400	Weak transcription	Fetal Lung	lung
16	chr19:41834800-41855600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:41834800-41856800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr19:41834800-41856800	Weak transcription	Brain Substantia Nigra	brain
19	chr19:41835000-41840400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr19:41835000-41841600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
21	chr19:41835000-41843400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr19:41835000-41845200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr19:41835000-41845600	Weak transcription	HSMM	muscle
24	chr19:41835000-41847600	Weak transcription	Gastric	stomach
25	chr19:41835000-41847800	Weak transcription	Pancreas	Pancrea
26	chr19:41835000-41854400	Strong transcription	Fetal Stomach	stomach
27	chr19:41835000-41856600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr19:41835000-41856800	Weak transcription	Brain Angular Gyrus	brain
29	chr19:41835200-41843600	Weak transcription	NH-A	brain
30	chr19:41835200-41846600	Weak transcription	HMEC	breast
31	chr19:41835200-41849400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr19:41835400-41840000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
33	chr19:41835400-41841200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr19:41835400-41845800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr19:41835400-41847600	Weak transcription	Colonic Mucosa	Colon
36	chr19:41835400-41847800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr19:41835600-41856000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr19:41835800-41840400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr19:41836000-41855200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr19:41836200-41840000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr19:41836200-41845200	Strong transcription	Osteobl	bone
42	chr19:41836800-41840600	Weak transcription	HSMMtube	muscle
43	chr19:41836800-41840600	Strong transcription	HUVEC	blood vessel
44	chr19:41836800-41841400	Strong transcription	Fetal Thymus	thymus
45	chr19:41836800-41843000	Strong transcription	Primary T cells from cord blood	blood
46	chr19:41837200-41840000	Strong transcription	Primary B cells from cord blood	blood
47	chr19:41837200-41847600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr19:41837200-41847600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr19:41837200-41850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr19:41837400-41840400	Strong transcription	GM12878-XiMat	blood

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