Variant report

Variant	rs1147015
Chromosome Location	chr11:104576851-104576852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10895717	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895720	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1147017	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1147022	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1147039	0.83[EUR][1000 genomes]
rs1147049	0.80[EUR][1000 genomes]
rs1200614	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200617	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1942508	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1942509	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1942518	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105709	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2850818	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3017888	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs506601	0.96[CEU][hapmap]
rs7924491	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs883505	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104575400-104577000	Flanking Active TSS	Dnd41	blood
2	chr11:104575400-104577400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr11:104575600-104577200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr11:104575800-104577200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:104575800-104577200	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr11:104576200-104577000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:104576200-104577000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:104576200-104577200	Active TSS	Primary T cells fromperipheralblood	blood
9	chr11:104576200-104577200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:104576200-104577200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:104576200-104577200	Enhancers	Fetal Lung	lung
12	chr11:104576200-104577200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr11:104576200-104577600	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr11:104576200-104577600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:104576400-104577000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr11:104576400-104577000	Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr11:104576400-104577000	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr11:104576400-104577000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:104576400-104577000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr11:104576400-104577000	Enhancers	Brain Anterior Caudate	brain
21	chr11:104576400-104577200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:104576400-104578800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:104576600-104577000	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr11:104576600-104580400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr11:104576600-104580600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:104576800-104577000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:104576800-104577000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr11:104576800-104577000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr11:104576800-104577200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:104576800-104577200	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr11:104576800-104577600	Enhancers	GM12878-XiMat	blood
32	chr11:104576800-104577600	Enhancers	HUVEC	blood vessel
33	chr11:104576800-104577800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr11:104576800-104577800	Enhancers	Primary B cells from peripheral blood	blood
35	chr11:104576800-104579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:104576800-104579000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links