Variant report

Variant	rs114707795
Chromosome Location	chr17:19436474-19436475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr17:19436411-19436535	MCF-7	breast:	n/a	n/a
2	RCOR1	chr17:19436474-19436621	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19435840..19438479-chr17:19458086..19460035,3	MCF-7	breast:

Variant related genes	Relation type
SLC47A1	TF binding region
ENSG00000142494	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428337	chr17:19340045-19585774	Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	esv3335342	chr17:19436410-19438558	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19430200-19436600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr17:19435600-19436600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr17:19436200-19436600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr17:19436200-19436600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
5	chr17:19436200-19437200	Flanking Active TSS	Liver	Liver
6	chr17:19436400-19436600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
7	chr17:19436400-19436600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr17:19436400-19436600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:19436400-19436600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr17:19436400-19436600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
11	chr17:19436400-19436600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr17:19436400-19436600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr17:19436400-19436600	Enhancers	Adipose Nuclei	Adipose
14	chr17:19436400-19436600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr17:19436400-19436600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr17:19436400-19436600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
17	chr17:19436400-19436600	Active TSS	Stomach Smooth Muscle	stomach
18	chr17:19436400-19436600	Enhancers	HUVEC	blood vessel
19	chr17:19436400-19436800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
20	chr17:19436400-19436800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr17:19436400-19436800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:19436400-19436800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr17:19436400-19436800	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr17:19436400-19436800	Enhancers	Ovary	ovary
25	chr17:19436400-19436800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
26	chr17:19436400-19436800	Flanking Active TSS	A549	lung
27	chr17:19436400-19437000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr17:19436400-19437000	Flanking Bivalent TSS/Enh	HepG2	liver
29	chr17:19436400-19437200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr17:19436400-19437200	Enhancers	Spleen	Spleen
31	chr17:19436400-19437800	Bivalent/Poised TSS	NHEK	skin
32	chr17:19436400-19438000	Bivalent Enhancer	Fetal Brain Male	brain
33	chr17:19436400-19438200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
34	chr17:19436400-19438400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
35	chr17:19436400-19438400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood

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