Variant report

Variant	rs114756167
Chromosome Location	chr15:83875333-83875334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83834964..83840588-chr15:83874121..83878306,6	MCF-7	breast:
2	chr15:83733142..83737236-chr15:83872525..83879828,15	MCF-7	breast:
3	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:
4	chr15:83652926..83655970-chr15:83874776..83878125,3	MCF-7	breast:
5	chr15:83678260..83683197-chr15:83874959..83878158,5	K562	blood:
6	chr15:83706535..83711494-chr15:83875161..83878411,4	MCF-7	breast:
7	chr15:83797822..83799422-chr15:83873732..83875902,2	K562	blood:
8	chr15:83733297..83738085-chr15:83874642..83880991,12	MCF-7	breast:
9	chr15:83874825..83876698-chr15:84113780..84116489,2	MCF-7	breast:
10	chr15:83733314..83737988-chr15:83872344..83875458,5	K562	blood:
11	chr15:83826728..83828298-chr15:83873729..83876383,2	MCF-7	breast:
12	chr15:83678614..83685168-chr15:83874398..83879059,12	MCF-7	breast:
13	chr15:83476923..83480237-chr15:83875108..83878990,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260608	Chromatin interaction
ENSG00000103942	Chromatin interaction
ENSG00000156232	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000169612	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000064726	Chromatin interaction
ENSG00000140600	Chromatin interaction
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3357133	chr15:83874773-83877521	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83870600-83875400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:83872000-83877200	Active TSS	GM12878-XiMat	blood
3	chr15:83873400-83875400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:83873400-83877600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:83873600-83877000	Active TSS	Stomach Smooth Muscle	stomach
6	chr15:83873800-83875400	Weak transcription	Pancreas	Pancrea
7	chr15:83874000-83877200	Active TSS	H1 Cell Line	embryonic stem cell
8	chr15:83874000-83877400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr15:83874200-83875400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:83874200-83875400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr15:83874200-83875600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:83874200-83877200	Active TSS	Aorta	Aorta
13	chr15:83874200-83877400	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr15:83874400-83875400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
15	chr15:83874400-83875400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr15:83874400-83875400	Flanking Active TSS	NHEK	skin
17	chr15:83874400-83875400	Flanking Active TSS	Osteobl	bone
18	chr15:83874400-83875600	Active TSS	Brain Germinal Matrix	brain
19	chr15:83874400-83875800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:83874400-83877600	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr15:83874600-83875400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr15:83874600-83875400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
23	chr15:83874600-83875400	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr15:83874600-83875600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:83874600-83875600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:83874600-83875600	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr15:83874600-83876000	Active TSS	Right Atrium	heart
28	chr15:83874600-83877000	Active TSS	Fetal Muscle Leg	muscle
29	chr15:83874600-83877200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:83874600-83877400	Active TSS	H9 Cell Line	embryonic stem cell
31	chr15:83874600-83877400	Active TSS	Brain Anterior Caudate	brain
32	chr15:83874600-83877600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:83874600-83877800	Active TSS	Fetal Brain Female	brain
34	chr15:83874800-83875400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr15:83874800-83875400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr15:83874800-83875400	Flanking Active TSS	Hela-S3	cervix
37	chr15:83874800-83875400	Flanking Active TSS	NHLF	lung
38	chr15:83874800-83875800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:83874800-83875800	Active TSS	Fetal Brain Male	brain
40	chr15:83874800-83877000	Active TSS	HUVEC	blood vessel
41	chr15:83874800-83877200	Active TSS	Ovary	ovary
42	chr15:83874800-83877400	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr15:83874800-83877400	Active TSS	Brain Angular Gyrus	brain
44	chr15:83874800-83877400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:83874800-83877400	Active TSS	NH-A	brain
46	chr15:83874800-83877600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:83874800-83877800	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:83875000-83875400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr15:83875000-83875400	Active TSS	Primary T cells from cord blood	blood
50	chr15:83875000-83875400	Flanking Active TSS	Brain Substantia Nigra	brain

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