Variant report

Variant	rs1148003
Chromosome Location	chr12:75978996-75978997
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:75924745..75926908-chr12:75978244..75979819,2	MCF-7	breast:
2	chr12:75977035..75979690-chr12:75984009..75986249,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10879928	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1148004	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1148005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1148006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275474	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1480001	0.85[AFR][1000 genomes]
rs1480002	0.86[AFR][1000 genomes]
rs1679381	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1795379	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1824980	0.85[ASN][1000 genomes]
rs1824982	0.85[ASN][1000 genomes]
rs2366987	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3847669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3858534	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492067	chr12:75415458-76077537	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1036987	chr12:75415532-76101559	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv899313	chr12:75715330-76057811	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv948653	chr12:75773464-76220618	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv470305	chr12:75896688-75987360	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75973600-75979600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:75977600-75985200	Weak transcription	Fetal Brain Female	brain
3	chr12:75977800-75980000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:75978200-75980000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:75978400-75980000	Enhancers	NH-A	brain
6	chr12:75978400-75986800	Enhancers	NHDF-Ad	bronchial
7	chr12:75978600-75979400	Enhancers	Aorta	Aorta
8	chr12:75978600-75979800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:75978600-75980000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:75978600-75980000	Enhancers	HMEC	breast
11	chr12:75978600-75980000	Enhancers	HSMM	muscle
12	chr12:75978600-75980000	Enhancers	HSMMtube	muscle
13	chr12:75978600-75980000	Enhancers	NHEK	skin
14	chr12:75978600-75981600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr12:75978800-75979200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr12:75978800-75979800	Flanking Active TSS	A549	lung
17	chr12:75978800-75979800	Enhancers	Hela-S3	cervix
18	chr12:75978800-75980000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:75978800-75980000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:75978800-75980000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr12:75978800-75980000	Enhancers	Fetal Intestine Small	intestine
22	chr12:75978800-75980000	Enhancers	HUVEC	blood vessel
23	chr12:75978800-75980000	Enhancers	NHLF	lung
24	chr12:75978800-75980200	Enhancers	Osteobl	bone
25	chr12:75978800-75980600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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