Variant report

Variant	rs114804155
Chromosome Location	chr6:34787353-34787354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:34787171-34787657	U2OS	brain:	n/a	n/a
2	SPI1	chr6:34787071-34787358	GM12878	blood:	n/a	chr6:34787155-34787168 chr6:34787157-34787166
3	MAZ	chr6:34787104-34787531	K562	blood:	n/a	n/a
4	MAFK	chr6:34787305-34787862	K562	blood:	n/a	chr6:34787662-34787677
5	CTCF	chr6:34787320-34787470	HEK293	kidney:	n/a	n/a
6	SPI1	chr6:34787047-34787656	HL-60	blood:	n/a	chr6:34787155-34787168 chr6:34787157-34787166
7	SPI1	chr6:34787047-34787397	HL-60	blood:	n/a	chr6:34787155-34787168 chr6:34787157-34787166

No.	Distal block	Cell Line	Cell type
1	chr6:34782930..34784591-chr6:34786044..34787965,3	K562	blood:
2	chr6:34780723..34782615-chr6:34786684..34789139,2	K562	blood:
3	chr6:34786614..34789043-chr6:34809197..34812183,2	K562	blood:

Variant related genes	Relation type
ENSG00000206717	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
18	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
19	nsv1016703	chr6:34784801-34827693	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
20	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34761400-34789400	Weak transcription	Fetal Stomach	stomach
2	chr6:34761400-34789400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:34761400-34790800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:34762000-34788400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:34764000-34803800	Weak transcription	HSMM	muscle
6	chr6:34764600-34787400	Weak transcription	Liver	Liver
7	chr6:34772600-34789400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:34773200-34791400	Weak transcription	Gastric	stomach
9	chr6:34775400-34802400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:34776600-34789600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:34777800-34789000	Weak transcription	Primary T cells from cord blood	blood
12	chr6:34779200-34797000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:34779200-34807400	Weak transcription	A549	lung
14	chr6:34779400-34787400	Weak transcription	HUVEC	blood vessel
15	chr6:34779400-34789400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:34779400-34789400	Weak transcription	Hela-S3	cervix
17	chr6:34779400-34796400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:34779400-34841000	Weak transcription	NH-A	brain
19	chr6:34779600-34791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:34779600-34791400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:34779600-34796200	Weak transcription	NHEK	skin
22	chr6:34779800-34787400	Weak transcription	Left Ventricle	heart
23	chr6:34779800-34789400	Weak transcription	Fetal Intestine Small	intestine
24	chr6:34780800-34794000	Weak transcription	Aorta	Aorta
25	chr6:34781000-34790800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:34781000-34797000	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:34781200-34789400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:34781400-34790800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:34781600-34787400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:34781600-34787400	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:34781600-34787400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:34781600-34787600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:34781600-34788000	Weak transcription	HSMMtube	muscle
34	chr6:34781600-34791000	Weak transcription	Brain Anterior Caudate	brain
35	chr6:34781600-34791400	Weak transcription	Brain Substantia Nigra	brain
36	chr6:34781600-34824000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:34781800-34790600	Weak transcription	Brain Germinal Matrix	brain
38	chr6:34782600-34789400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:34782800-34790800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:34783200-34807400	Weak transcription	Psoas Muscle	Psoas
41	chr6:34783400-34787400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:34784200-34789600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:34784600-34789400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:34784600-34789600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:34785000-34787400	Weak transcription	Small Intestine	intestine
46	chr6:34785200-34789400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:34785400-34789400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:34785400-34789400	Weak transcription	Fetal Brain Female	brain
49	chr6:34785400-34789400	Weak transcription	HepG2	liver
50	chr6:34785400-34789600	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links