Variant report

Variant	rs1148174
Chromosome Location	chr10:28584597-28584598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28580079..28588330-chr10:28588541..28593496,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1144513	0.83[EUR][1000 genomes]
rs1148173	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1148175	0.85[GIH][hapmap]
rs12248351	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12256403	0.86[CHB][hapmap];0.80[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12573451	0.92[CHD][hapmap]
rs1413905	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2124955	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs61845904	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7086078	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7905490	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9663446	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv437663	chr10:28562647-28585496	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28571400-28584600	Weak transcription	Fetal Intestine Small	intestine
2	chr10:28571800-28587800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:28573800-28587400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:28577800-28585200	Weak transcription	Gastric	stomach
5	chr10:28579000-28588400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:28579400-28585000	Weak transcription	Stomach Mucosa	stomach
7	chr10:28580000-28590400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:28580600-28587800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr10:28580600-28591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:28581200-28584600	Weak transcription	Psoas Muscle	Psoas
11	chr10:28581200-28590200	Weak transcription	Fetal Heart	heart
12	chr10:28581800-28584600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:28581800-28585000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:28581800-28590600	Weak transcription	HMEC	breast
15	chr10:28582000-28585400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:28582000-28586400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:28582200-28590800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:28582400-28584800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:28582400-28590600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:28582600-28586200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr10:28582600-28586400	Enhancers	Primary T cells from cord blood	blood
22	chr10:28582800-28584600	Weak transcription	Aorta	Aorta
23	chr10:28583000-28585600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:28583000-28585800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr10:28583000-28586200	Enhancers	HepG2	liver
26	chr10:28583000-28589000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr10:28583000-28590600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:28583200-28586200	Enhancers	Colon Smooth Muscle	Colon
29	chr10:28583200-28590800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr10:28583400-28585000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:28583400-28585600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr10:28583400-28585600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:28583600-28586200	Enhancers	Rectal Smooth Muscle	rectum
34	chr10:28583800-28585400	Enhancers	Left Ventricle	heart
35	chr10:28583800-28585600	Enhancers	Fetal Stomach	stomach
36	chr10:28583800-28585600	Enhancers	Ovary	ovary
37	chr10:28583800-28585600	Enhancers	HSMMtube	muscle
38	chr10:28584000-28584600	Weak transcription	Pancreas	Pancrea
39	chr10:28584000-28585000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:28584000-28585400	Enhancers	Osteobl	bone
41	chr10:28584000-28585600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr10:28584000-28588000	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr10:28584200-28584600	Enhancers	Fetal Lung	lung
44	chr10:28584200-28584600	Enhancers	NHEK	skin
45	chr10:28584200-28585000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr10:28584200-28585600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:28584200-28586000	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr10:28584200-28587600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr10:28584200-28589400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:28584400-28584800	Enhancers	Muscle Satellite Cultured Cells	--

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