Variant report

Variant	rs1148195
Chromosome Location	chr10:28656644-28656645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10430559	0.85[ASN][1000 genomes]
rs11007064	0.90[ASN][1000 genomes]
rs2797593	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28644400-28665000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28653400-28656800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr10:28653600-28658400	Enhancers	Fetal Intestine Large	intestine
4	chr10:28654000-28657600	Enhancers	Fetal Intestine Small	intestine
5	chr10:28654000-28658800	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:28654200-28656800	Enhancers	Primary T cells from cord blood	blood
7	chr10:28654200-28656800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:28654200-28656800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:28654200-28656800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:28654200-28660400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:28654400-28656800	Enhancers	Primary B cells from cord blood	blood
12	chr10:28654400-28656800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:28654400-28656800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:28654600-28657200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:28654600-28657400	Enhancers	Stomach Mucosa	stomach
16	chr10:28654800-28657200	Enhancers	Thymus	Thymus
17	chr10:28655000-28659600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:28655200-28657600	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:28655400-28656800	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr10:28655400-28657000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr10:28655400-28657600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr10:28655400-28657800	Enhancers	Fetal Thymus	thymus
23	chr10:28655400-28658000	Enhancers	HepG2	liver
24	chr10:28655400-28658800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:28655800-28656800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:28655800-28657400	Enhancers	Fetal Muscle Leg	muscle
27	chr10:28655800-28658000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr10:28656000-28656800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:28656000-28657000	Enhancers	Lung	lung
30	chr10:28656000-28657200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr10:28656000-28657400	Enhancers	Small Intestine	intestine
32	chr10:28656200-28657000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:28656200-28657200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:28656200-28657200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr10:28656200-28657200	Enhancers	Placenta	Placenta
36	chr10:28656200-28657800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr10:28656200-28661800	Weak transcription	Colonic Mucosa	Colon
38	chr10:28656400-28656800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr10:28656400-28657200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:28656400-28657200	Enhancers	Liver	Liver
41	chr10:28656400-28657200	Enhancers	GM12878-XiMat	blood
42	chr10:28656600-28656800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr10:28656600-28656800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:28656600-28656800	Enhancers	Adipose Nuclei	Adipose
45	chr10:28656600-28657400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr10:28656600-28657600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr10:28656600-28657800	Enhancers	Fetal Muscle Trunk	muscle

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