Variant report

Variant	rs114851155
Chromosome Location	chr20:21735870-21735871
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:35)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:35 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr20:21735808-21736259	HepG2	liver:	n/a	n/a
2	GABPA	chr20:21735849-21736141	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr20:21735864-21736296	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr20:21735838-21736288	H1-hESC	embryonic stem cell:	n/a	n/a
5	ZBTB33	chr20:21735841-21736317	GM12878	blood:	n/a	n/a
6	POLR2A	chr20:21735762-21736505	H1-hESC	embryonic stem cell:	n/a	n/a
7	REST	chr20:21735850-21736194	PANC-1	pancreas:	n/a	n/a
8	TAF1	chr20:21735863-21736213	Hela-S3	cervix:	n/a	n/a
9	GATA2	chr20:21735849-21736313	K562	blood:	n/a	n/a
10	POLR2A	chr20:21735795-21736298	Hela-S3	cervix:	n/a	n/a
11	HEY1	chr20:21735868-21736312	K562	blood:	n/a	n/a
12	PAX5	chr20:21735781-21736306	GM12878	blood:	n/a	n/a
13	ZBTB33	chr20:21735764-21736371	K562	blood:	n/a	n/a
14	POLR2A	chr20:21735870-21736253	GM12878	blood:	n/a	n/a
15	IRF4	chr20:21735787-21736201	GM12878	blood:	n/a	n/a
16	POLR2A	chr20:21735862-21736339	SK-N-MC	brain:	n/a	n/a
17	POLR2A	chr20:21735856-21736226	GM12891	blood:	n/a	n/a
18	POLR2A	chr20:21735853-21736242	GM12891	blood:	n/a	n/a
19	POLR2A	chr20:21735682-21736435	GM12892	blood:	n/a	n/a
20	POLR2A	chr20:21735836-21736318	GM12878	blood:	n/a	n/a
21	POLR2A	chr20:21735837-21736302	GM12892	blood:	n/a	n/a
22	TCF12	chr20:21735863-21736238	GM12878	blood:	n/a	n/a
23	POLR2A	chr20:21735841-21736235	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr20:21735798-21736338	GM12878	blood:	n/a	n/a
25	ZBTB33	chr20:21735825-21736256	HepG2	liver:	n/a	n/a
26	POLR2A	chr20:21735817-21736307	GM12892	blood:	n/a	n/a
27	SP1	chr20:21735832-21736185	GM12878	blood:	n/a	n/a
28	POLR2A	chr20:21735784-21736332	GM12892	blood:	n/a	n/a
29	POU2F2	chr20:21735778-21736297	GM12878	blood:	n/a	n/a
30	PAX5	chr20:21735857-21736273	GM12878	blood:	n/a	n/a
31	TCF3	chr20:21735860-21736234	GM12878	blood:	n/a	n/a
32	ZBTB33	chr20:21735796-21736268	GM12878	blood:	n/a	n/a
33	POLR2A	chr20:21735816-21736261	GM12891	blood:	n/a	n/a
34	POLR2A	chr20:21735854-21736223	H1-hESC	embryonic stem cell:	n/a	n/a
35	HEY1	chr20:21735847-21736303	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PAX1-5	chr20:21735866-21736171	NONHSAT078957

No data

Variant related genes	Relation type
RPL41P1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv962561	chr20:21723464-21736893	ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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