Variant report

Variant	rs114882151
Chromosome Location	chr4:79859584-79859585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79471198..79473938-chr4:79857809..79860687,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138772	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3392523	chr4:79859553-79862101	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79794200-79859600	Weak transcription	Colonic Mucosa	Colon
2	chr4:79814600-79859600	Weak transcription	Fetal Kidney	kidney
3	chr4:79833000-79859800	Weak transcription	Esophagus	oesophagus
4	chr4:79833000-79859800	Weak transcription	Right Ventricle	heart
5	chr4:79833200-79859600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:79833600-79859800	Weak transcription	Placenta	Placenta
7	chr4:79845800-79860000	Weak transcription	Small Intestine	intestine
8	chr4:79849200-79859600	Weak transcription	Fetal Lung	lung
9	chr4:79850600-79859600	Weak transcription	HSMMtube	muscle
10	chr4:79850800-79859600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:79850800-79859600	Weak transcription	Ovary	ovary
12	chr4:79850800-79859800	Weak transcription	Left Ventricle	heart
13	chr4:79850800-79859800	Weak transcription	Pancreas	Pancrea
14	chr4:79850800-79860000	Weak transcription	Gastric	stomach
15	chr4:79850800-79860000	Weak transcription	Lung	lung
16	chr4:79850800-79860000	Weak transcription	Spleen	Spleen
17	chr4:79851400-79859600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr4:79851800-79859600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:79854000-79859800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:79855000-79859600	Weak transcription	Fetal Thymus	thymus
21	chr4:79857000-79859600	Weak transcription	Liver	Liver
22	chr4:79857800-79859600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:79858000-79859600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:79858000-79859600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr4:79858000-79859600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:79858000-79859600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:79858000-79859600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr4:79858000-79859600	Enhancers	Colon Smooth Muscle	Colon
29	chr4:79858000-79859600	Enhancers	HepG2	liver
30	chr4:79858000-79859800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:79858000-79859800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr4:79858400-79859600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr4:79858400-79859600	Enhancers	Psoas Muscle	Psoas
34	chr4:79858600-79859600	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr4:79858600-79859800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr4:79858600-79860000	Flanking Active TSS	Dnd41	blood
37	chr4:79858800-79859600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr4:79858800-79859600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:79858800-79859600	Enhancers	Fetal Intestine Small	intestine
40	chr4:79858800-79859800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr4:79858800-79860200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:79859000-79859600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
43	chr4:79859000-79859600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:79859000-79859600	Enhancers	Primary B cells from peripheral blood	blood
45	chr4:79859000-79859600	Enhancers	Primary T cells fromperipheralblood	blood
46	chr4:79859000-79859600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:79859000-79859600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:79859000-79859600	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr4:79859000-79859600	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr4:79859000-79859600	Flanking Active TSS	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links