Variant report

Variant	rs1148822
Chromosome Location	chr1:179780141-179780142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179672208..179674210-chr1:179778316..179781099,2	MCF-7	breast:
2	chr1:179674246..179676441-chr1:179778955..179781367,2	MCF-7	breast:
3	chr1:179759492..179761107-chr1:179780087..179782763,2	MCF-7	breast:
4	chr1:179675218..179676600-chr1:179778027..179780620,16	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1148823	0.92[ASN][1000 genomes]
rs1148824	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1148825	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1281420	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1281421	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2647225	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2794586	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2794588	0.85[AMR][1000 genomes]
rs3845386	0.82[EUR][1000 genomes]
rs6425594	0.82[EUR][1000 genomes]
rs6695329	0.81[EUR][1000 genomes]
rs6701652	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009961	chr1:179714247-179790110	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1011407	chr1:179733193-179799430	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv520418	chr1:179761601-179794602	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv519307	chr1:179766086-179795505	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179777000-179781600	Enhancers	Fetal Thymus	thymus
2	chr1:179777200-179783600	Weak transcription	Right Atrium	heart
3	chr1:179779000-179781200	Weak transcription	Brain Germinal Matrix	brain
4	chr1:179779000-179781600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:179779000-179783400	Weak transcription	Esophagus	oesophagus
6	chr1:179779200-179781400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:179779200-179783200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:179779200-179783200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:179779200-179783200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:179779200-179783200	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:179779200-179783400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:179779200-179783400	Weak transcription	Brain Angular Gyrus	brain
13	chr1:179779200-179783400	Weak transcription	Brain Anterior Caudate	brain
14	chr1:179779200-179783400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:179779200-179783400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:179779200-179783400	Weak transcription	Brain Substantia Nigra	brain
17	chr1:179779200-179783400	Weak transcription	Fetal Intestine Large	intestine
18	chr1:179779200-179783600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:179779200-179783600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:179780000-179783400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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