Variant report

Variant	rs11489504
Chromosome Location	chr7:97620778-97620779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:97620777-97620827	K562	blood:	n/a
2	chr7:97620777-97620827	ECC-1	luminal epithelium:	n/a
3	chr7:97620777-97620827	IMR90	lung:	fetal
4	chr7:97620777-97620827	HL-60	blood:	n/a
5	chr7:97620777-97620827	HEEpiC	esophagus:	n/a
6	chr7:97620777-97620827	Hela-S3	cervix:	n/a
7	chr7:97620777-97620827	Hepatocyte	liver:	n/a
8	chr7:97620777-97620827	HMEC	breast:	n/a
9	chr7:97620777-97620827	HUVEC	blood vessel:	n/a
10	chr7:97620777-97620827	HRE	kidney:	n/a
11	chr7:97620777-97620827	HepG2	liver:	n/a
12	chr7:97620777-97620827	T-47D	breast:	n/a
13	chr7:97620777-97620827	HCPEpiC	choroid plexus:	n/a
14	chr7:97620777-97620827	NB4	blood:	n/a
15	chr7:97620777-97620827	MCF10A-Er-Src	breast:	n/a
16	chr7:97620777-97620827	CMK	blood:	n/a
17	chr7:97620777-97620827	AG04450	lung:	fetal
18	chr7:97620777-97620827	HCT-116	colon:	n/a
19	chr7:97620777-97620827	AG10803	skin:	n/a
20	chr7:97620777-97620827	SK-N-MC	brain:	n/a
21	chr7:97620777-97620827	HIPEpiC	eye:	n/a
22	chr7:97620777-97620827	SAEC	small airway:	n/a
23	chr7:97620777-97620827	SK-N-SH_RA	brain:	n/a
24	chr7:97620777-97620827	SK-N-SH	brain:	n/a
25	chr7:97620777-97620827	HRCEpiC	kidney:	n/a
26	chr7:97620777-97620827	HRPEpiC	eye:	n/a
27	chr7:97620777-97620827	GM12891	blood:	n/a
28	chr7:97620777-97620827	HAEpiC	amniotic membrane:	n/a
29	chr7:97620777-97620827	HCM	heart:	n/a
30	chr7:97620777-97620827	LNCaP	prostate:	n/a
31	chr7:97620777-97620827	Jurkat	blood:	n/a
32	chr7:97620777-97620827	NHDF-neo	bronchial:	n/a
33	chr7:97620777-97620827	BJ	skin:	n/a
34	chr7:97620777-97620827	BE2_C	brain:	n/a
35	chr7:97620777-97620827	GM12878	blood:	n/a
36	chr7:97620777-97620827	SKMC	muscle:	n/a
37	chr7:97620777-97620827	PANC-1	pancreas:	n/a
38	chr7:97620777-97620827	GM06990	blood:	n/a
39	chr7:97620777-97620827	HNPCEpiC	eye:	n/a
40	chr7:97620777-97620827	HCF	heart:	n/a
41	chr7:97620777-97620827	Caco-2	colon:	n/a
42	chr7:97620777-97620827	MCF-7	breast:	n/a
43	chr7:97620777-97620827	AG09309	skin:	n/a
44	chr7:97620777-97620827	U87	brain:	n/a
45	chr7:97620777-97620827	RPTEC	kidney:	n/a
46	chr7:97620777-97620827	PFSK-1	brain:	n/a
47	chr7:97620777-97620827	AoSMC	blood vessel:	n/a
48	chr7:97620777-97620827	A549	lung:	n/a
49	chr7:97620777-97620827	GM19239	blood:	n/a
50	chr7:97620777-97620827	AG04449	skin:	fetal

No data

Variant related genes	Relation type
OCM2	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4727387	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758124	chr7:97476284-97648029	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759546	chr7:97476284-97648029	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv970555	chr7:97502806-97639154	Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
7	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
8	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	esv32764	chr7:97601058-97638993	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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