Variant report

Variant	rs11494145
Chromosome Location	chr11:102242735-102242736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11229970	0.83[AFR][1000 genomes]
rs11229986	0.88[AFR][1000 genomes]
rs11229987	0.83[AFR][1000 genomes]
rs1216225	0.85[AFR][1000 genomes]
rs1216248	0.88[AFR][1000 genomes]
rs12291883	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1425189	0.85[AFR][1000 genomes]
rs1783729	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1789803	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4939302	0.88[AFR][1000 genomes]
rs606956	0.92[AFR][1000 genomes]
rs7482433	0.88[AFR][1000 genomes]
rs7934090	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102225600-102255400	Weak transcription	Fetal Heart	heart
3	chr11:102230800-102245400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:102232400-102245400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:102232400-102245400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:102232400-102259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:102232600-102245400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:102232600-102245600	Weak transcription	Esophagus	oesophagus
9	chr11:102232600-102255000	Weak transcription	Right Atrium	heart
10	chr11:102233000-102245600	Weak transcription	Stomach Mucosa	stomach
11	chr11:102235600-102255000	Weak transcription	Right Ventricle	heart
12	chr11:102235800-102259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:102236400-102245600	Weak transcription	K562	blood
14	chr11:102236600-102245600	Weak transcription	Pancreas	Pancrea
15	chr11:102236600-102249800	Weak transcription	Psoas Muscle	Psoas
16	chr11:102236600-102249800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:102236800-102245600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:102236800-102245600	Weak transcription	Spleen	Spleen
19	chr11:102237000-102248600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:102237000-102249600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:102237000-102255400	Weak transcription	Aorta	Aorta
22	chr11:102237000-102263800	Weak transcription	Small Intestine	intestine
23	chr11:102237200-102249200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:102237200-102249600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:102237400-102245600	Weak transcription	Fetal Intestine Small	intestine
26	chr11:102237400-102245600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:102237600-102245600	Weak transcription	Fetal Stomach	stomach
28	chr11:102237600-102245600	Weak transcription	Gastric	stomach
29	chr11:102237600-102249600	Weak transcription	Colonic Mucosa	Colon
30	chr11:102238000-102245600	Weak transcription	Lung	lung
31	chr11:102238400-102245800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:102239000-102245600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:102239400-102245000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:102239400-102245400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:102239400-102245800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:102239400-102248400	Weak transcription	Primary T cells from cord blood	blood
37	chr11:102239600-102245600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:102239600-102245600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:102239600-102245600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:102239600-102245600	Weak transcription	Brain Substantia Nigra	brain
41	chr11:102239600-102245600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:102239600-102245600	Weak transcription	Left Ventricle	heart
43	chr11:102239600-102246000	Weak transcription	Brain Angular Gyrus	brain
44	chr11:102239600-102248200	Weak transcription	Fetal Brain Female	brain
45	chr11:102239600-102248800	Weak transcription	NHLF	lung
46	chr11:102239600-102249600	Weak transcription	Brain Hippocampus Middle	brain
47	chr11:102239600-102249600	Weak transcription	Ovary	ovary
48	chr11:102239600-102250200	Weak transcription	Fetal Kidney	kidney
49	chr11:102239600-102259000	Weak transcription	Fetal Brain Male	brain
50	chr11:102239800-102245400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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