Variant report

Variant	rs11498834
Chromosome Location	chr10:110779208-110779209
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10509889	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11194355	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11194389	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12241787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250006	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12253244	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12256742	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12262910	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12264315	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125584	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17125665	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57232609	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584919	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7072991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073108	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073705	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093209	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342480	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv895993	chr10:110639267-110814528	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv895994	chr10:110702426-110982703	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv895995	chr10:110702426-111348202	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv895996	chr10:110739765-110991026	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1048918	chr10:110757671-110823083	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv895997	chr10:110761477-110863795	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110778400-110779400	Enhancers	Adipose Nuclei	Adipose
2	chr10:110779000-110779400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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