Variant report

Variant	rs11501162
Chromosome Location	chr11:121400762-121400763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12277675	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285364	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs12285564	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs12290890	0.82[CEU][hapmap];0.90[YRI][hapmap]
rs12421319	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17125414	0.82[CEU][hapmap]
rs2298525	1.00[ASW][hapmap]
rs2298813	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs4935776	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57505943	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59675216	0.81[AFR][1000 genomes]
rs755678	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs987482	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
2	chr11:121385600-121418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:121392400-121414800	Weak transcription	Stomach Mucosa	stomach
5	chr11:121393400-121414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:121393600-121415400	Weak transcription	Colonic Mucosa	Colon
7	chr11:121395000-121403000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:121395000-121404000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:121395200-121403000	Weak transcription	Thymus	Thymus
10	chr11:121395200-121414000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:121395200-121414400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:121395200-121434800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:121395400-121403000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:121395400-121404000	Weak transcription	Brain Angular Gyrus	brain
15	chr11:121395400-121404600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:121395400-121424600	Weak transcription	Gastric	stomach
17	chr11:121396200-121403000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:121396400-121405000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:121396400-121414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:121396600-121400800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:121396600-121400800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:121396600-121400800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:121396600-121401000	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:121396600-121402400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:121396600-121404600	Weak transcription	Brain Anterior Caudate	brain
27	chr11:121396600-121405400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:121396600-121405600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:121396600-121405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:121396600-121414200	Weak transcription	Pancreas	Pancrea
31	chr11:121396600-121437600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:121396800-121405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:121396800-121414000	Weak transcription	Esophagus	oesophagus
34	chr11:121396800-121414200	Weak transcription	Spleen	Spleen
35	chr11:121396800-121414400	Weak transcription	Fetal Lung	lung
36	chr11:121396800-121415400	Weak transcription	Fetal Stomach	stomach
37	chr11:121396800-121417400	Weak transcription	Aorta	Aorta
38	chr11:121396800-121425400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:121397000-121434800	Weak transcription	Fetal Kidney	kidney
40	chr11:121398200-121401600	ZNF genes & repeats	GM12878-XiMat	blood
41	chr11:121398800-121400800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:121399000-121400800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr11:121399200-121401400	ZNF genes & repeats	Dnd41	blood
45	chr11:121399200-121401800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:121399200-121408400	Strong transcription	HepG2	liver
47	chr11:121399400-121400800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:121399400-121401000	Strong transcription	Fetal Thymus	thymus
49	chr11:121399400-121401200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr11:121399400-121401600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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