Variant report

Variant	rs115016620
Chromosome Location	chr13:48072562-48072563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2598107	chr13:48072196-48073748	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48065400-48072600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:48071200-48075200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr13:48071600-48073400	Enhancers	Hela-S3	cervix
4	chr13:48071800-48072800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr13:48071800-48073600	Enhancers	Primary hematopoietic stem cells	blood
6	chr13:48071800-48073600	Weak transcription	Brain Hippocampus Middle	brain
7	chr13:48072000-48072600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:48072000-48072800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:48072000-48072800	Enhancers	Primary B cells from peripheral blood	blood
10	chr13:48072000-48072800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:48072000-48072800	Enhancers	Spleen	Spleen
12	chr13:48072000-48073800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:48072200-48072600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:48072200-48072800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr13:48072200-48072800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr13:48072200-48076400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:48072400-48072600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:48072400-48072600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:48072400-48072800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr13:48072400-48073000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:48072400-48073400	Enhancers	Muscle Satellite Cultured Cells	--

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