The 2.0 version of rSNPBase

Variant report

Variant rs115042310
Chromosome Location chr6:13230459-13230460
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:13208200-13239800 Weak transcription Brain Substantia Nigra brain
2 chr6:13217800-13242400 Weak transcription Pancreas Pancrea
3 chr6:13218200-13235000 Weak transcription Adipose Nuclei Adipose
4 chr6:13218400-13241000 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr6:13218600-13234400 Weak transcription HSMM muscle
6 chr6:13223200-13232200 Weak transcription Lung lung
7 chr6:13224600-13231800 Weak transcription Fetal Heart heart
8 chr6:13227400-13232400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr6:13227800-13233200 Strong transcription Left Ventricle heart
10 chr6:13227800-13235600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr6:13227800-13238600 Strong transcription Stomach Smooth Muscle stomach
12 chr6:13227800-13240000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr6:13227800-13244000 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr6:13228000-13236000 Weak transcription Fetal Brain Male brain
15 chr6:13228400-13232800 Strong transcription Brain Germinal Matrix brain
16 chr6:13228400-13237200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr6:13228600-13231000 Enhancers Primary B cells from cord blood blood
18 chr6:13228800-13230600 Enhancers Primary T helper naive cells from peripheral blood blood
19 chr6:13228800-13231200 Enhancers Primary Natural Killer cells fromperipheralblood blood
20 chr6:13229000-13230600 Flanking Active TSS GM12878-XiMat blood
21 chr6:13229200-13240000 Weak transcription Fetal Lung lung
22 chr6:13229400-13231200 Enhancers Primary B cells from peripheral blood blood
23 chr6:13229400-13248200 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr6:13229600-13233200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr6:13229600-13233200 Strong transcription Aorta Aorta
26 chr6:13229800-13230600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
27 chr6:13229800-13230600 Enhancers Primary neutrophils fromperipheralblood blood
28 chr6:13229800-13230600 Strong transcription Right Ventricle heart
29 chr6:13230000-13230600 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr6:13230000-13230600 Genic enhancers Spleen Spleen
31 chr6:13230000-13230800 Strong transcription Fetal Muscle Leg muscle
32 chr6:13230000-13231000 Bivalent Enhancer Primary T cells fromperipheralblood blood
33 chr6:13230000-13231200 Strong transcription Brain Inferior Temporal Lobe brain
34 chr6:13230000-13232800 Strong transcription Fetal Brain Female brain
35 chr6:13230000-13233200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr6:13230000-13233200 Strong transcription Brain Angular Gyrus brain
37 chr6:13230000-13233400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr6:13230000-13236000 Strong transcription Brain Anterior Caudate brain
39 chr6:13230000-13239800 Weak transcription Fetal Muscle Trunk muscle
40 chr6:13230200-13231200 Strong transcription Fetal Stomach stomach
41 chr6:13230200-13231600 Strong transcription Fetal Adrenal Gland Adrenal Gland
42 chr6:13230200-13231800 Weak transcription Primary hematopoietic stem cells blood
43 chr6:13230200-13232800 Strong transcription Brain Cingulate Gyrus brain
44 chr6:13230200-13232800 Strong transcription Brain Hippocampus Middle brain
45 chr6:13230200-13234200 Weak transcription Liver Liver
46 chr6:13230200-13235000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr6:13230200-13242400 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015