Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28182735..28195387-chr6:28315960..28325841,32	K562	blood:
2	chr6:27774472..27777190-chr6:28183511..28185747,2	K562	blood:
3	chr6:28183629..28195178-chr6:28316250..28325659,29	K562	blood:
4	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:
5	chr6:27860805..27862945-chr6:28182726..28184284,2	K562	blood:
6	chr6:28120467..28123016-chr6:28183065..28185019,2	MCF-7	breast:
7	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
8	chr6:28183176..28185636-chr6:28218176..28220356,3	MCF-7	breast:
9	chr6:28182366..28191375-chr6:28300021..28306741,17	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1150701	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150703	0.83[AMR][1000 genomes]
rs1150708	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1233712	0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1736893	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1778469	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs988083	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs988084	0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883514	chr6:28155418-28185726	Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv883516	chr6:28156476-28185726	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28180800-28186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28181000-28185400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:28181400-28186000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:28181400-28186000	Weak transcription	HSMM	muscle
5	chr6:28181600-28185600	Weak transcription	GM12878-XiMat	blood
6	chr6:28182800-28184200	Flanking Active TSS	Hela-S3	cervix
7	chr6:28182800-28186000	Enhancers	Placenta	Placenta
8	chr6:28183400-28184200	Active TSS	K562	blood
9	chr6:28183400-28184800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
10	chr6:28183600-28185600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:28183600-28186000	Weak transcription	HMEC	breast
12	chr6:28183600-28186200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:28183800-28184200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:28183800-28185800	Enhancers	HepG2	liver
15	chr6:28184000-28184200	Weak transcription	NHEK	skin
16	chr6:28184000-28184800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:28184000-28185000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr6:28184000-28185800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:28184000-28186000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:28184000-28186000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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