Variant report

Variant	rs115140905
Chromosome Location	chr13:53774442-53774443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3427175	chr13:53773776-53776324	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3386985	chr13:53774176-53776724	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53773400-53775400	Weak transcription	Brain Anterior Caudate	brain
2	chr13:53773800-53774800	Bivalent Enhancer	Fetal Brain Female	brain
3	chr13:53774000-53774600	Bivalent Enhancer	Fetal Brain Male	brain
4	chr13:53774000-53774800	Bivalent Enhancer	Brain Germinal Matrix	brain
5	chr13:53774200-53776200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:53774200-53776200	ZNF genes & repeats	Spleen	Spleen
7	chr13:53774200-53776600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:53774400-53774600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:53774400-53775200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:53774400-53776600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:53774400-53776600	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links