Variant report

Variant	rs11515246
Chromosome Location	chr9:2201212-2201213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10965292	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016148	chr9:1457605-2361750	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv539916	chr9:1457605-2361750	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1021712	chr9:1647840-2216839	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv539921	chr9:1647840-2216839	Bivalent Enhancer Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1020530	chr9:1870197-2658587	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1022063	chr9:2094860-2215240	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv539926	chr9:2094860-2215240	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv892056	chr9:2124140-2227217	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv892057	chr9:2144687-2241994	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	nsv892059	chr9:2198627-2255397	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2173200-2201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:2179400-2202800	Weak transcription	Psoas Muscle	Psoas
3	chr9:2188000-2201600	Weak transcription	Small Intestine	intestine
4	chr9:2188400-2202400	Strong transcription	Primary T cells from cord blood	blood
5	chr9:2191600-2213800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:2191600-2221200	Weak transcription	Gastric	stomach
7	chr9:2192800-2202400	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:2193200-2208600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:2194000-2202200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:2194200-2203000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:2194200-2203200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:2195800-2201800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:2196000-2203200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:2196400-2203200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:2196400-2214000	Weak transcription	Left Ventricle	heart
16	chr9:2197200-2201600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:2197400-2204000	Weak transcription	Liver	Liver
18	chr9:2198200-2202800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:2198400-2202400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr9:2198800-2202400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr9:2199200-2202000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
22	chr9:2199200-2202600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:2199400-2201400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:2199400-2202000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr9:2199400-2202200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:2200000-2202000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
27	chr9:2200600-2201800	Weak transcription	Aorta	Aorta
28	chr9:2200600-2202000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
29	chr9:2200600-2202200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:2200600-2203400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr9:2200600-2213800	Weak transcription	Right Ventricle	heart
32	chr9:2200800-2201600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:2200800-2209400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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