Variant report

Variant	rs1151754
Chromosome Location	chr1:62150041-62150042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:62149581..62151297-chr1:62188336..62190788,2	K562	blood:
2	chr1:62148615..62150124-chr1:62189264..62192017,2	MCF-7	breast:
3	chr1:62149064..62151297-chr1:62189288..62192078,2	K562	blood:

Variant related genes	Relation type
ENSG00000162604	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1151763	1.00[YRI][hapmap]
rs1286698	1.00[YRI][hapmap]
rs1286700	1.00[YRI][hapmap]
rs1890264	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv947264	chr1:62146171-62151947	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62126000-62165200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:62131600-62151400	Weak transcription	Lung	lung
3	chr1:62131600-62163800	Weak transcription	Thymus	Thymus
4	chr1:62134800-62164400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:62134800-62164400	Weak transcription	Right Ventricle	heart
6	chr1:62135000-62165000	Weak transcription	Brain Germinal Matrix	brain
7	chr1:62136000-62151200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:62136000-62153400	Weak transcription	NHDF-Ad	bronchial
9	chr1:62136600-62151800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:62136800-62173800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:62138800-62189600	Weak transcription	Psoas Muscle	Psoas
12	chr1:62140000-62189000	Weak transcription	NHLF	lung
13	chr1:62140200-62163800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:62142800-62157800	Weak transcription	A549	lung
15	chr1:62142800-62172200	Weak transcription	Ovary	ovary
16	chr1:62142800-62188600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:62143000-62151200	Weak transcription	Fetal Stomach	stomach
18	chr1:62143200-62157800	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:62143200-62164000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:62143400-62153000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr1:62143600-62163400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:62143800-62152600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:62143800-62165600	Weak transcription	Stomach Mucosa	stomach
24	chr1:62143800-62170200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:62144000-62153000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr1:62144200-62150200	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr1:62144200-62162800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:62144600-62163800	Weak transcription	Spleen	Spleen
29	chr1:62144600-62164800	Weak transcription	Fetal Brain Female	brain
30	chr1:62144600-62165000	Weak transcription	Brain Substantia Nigra	brain
31	chr1:62144600-62165600	Weak transcription	HepG2	liver
32	chr1:62144800-62153000	Strong transcription	Liver	Liver
33	chr1:62144800-62161400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr1:62144800-62161600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:62144800-62163000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr1:62144800-62164400	Weak transcription	Fetal Brain Male	brain
37	chr1:62145000-62151000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr1:62145000-62162600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:62145000-62163000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr1:62145000-62164800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr1:62145000-62165000	Weak transcription	NH-A	brain
42	chr1:62145000-62172200	Weak transcription	Colonic Mucosa	Colon
43	chr1:62145200-62167400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr1:62145600-62150200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:62145600-62150600	Strong transcription	Primary T cells from cord blood	blood
46	chr1:62145800-62153000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:62145800-62153200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr1:62146000-62150200	Strong transcription	K562	blood
49	chr1:62146000-62150800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr1:62146000-62153200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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