Variant report

Variant	rs1151769
Chromosome Location	chr1:62164225-62164226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62162809..62165053-chr1:62166918..62169427,2	K562	blood:
2	chr1:62157037..62159545-chr1:62162832..62164791,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1286625	0.81[AFR][1000 genomes]
rs1286627	1.00[EUR][1000 genomes]
rs2185983	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56108611	1.00[EUR][1000 genomes]
rs74076123	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62126000-62165200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:62134800-62164400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:62134800-62164400	Weak transcription	Right Ventricle	heart
4	chr1:62135000-62165000	Weak transcription	Brain Germinal Matrix	brain
5	chr1:62136800-62173800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:62138800-62189600	Weak transcription	Psoas Muscle	Psoas
7	chr1:62140000-62189000	Weak transcription	NHLF	lung
8	chr1:62142800-62172200	Weak transcription	Ovary	ovary
9	chr1:62142800-62188600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:62143800-62165600	Weak transcription	Stomach Mucosa	stomach
11	chr1:62143800-62170200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:62144600-62164800	Weak transcription	Fetal Brain Female	brain
13	chr1:62144600-62165000	Weak transcription	Brain Substantia Nigra	brain
14	chr1:62144600-62165600	Weak transcription	HepG2	liver
15	chr1:62144800-62164400	Weak transcription	Fetal Brain Male	brain
16	chr1:62145000-62164800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:62145000-62165000	Weak transcription	NH-A	brain
18	chr1:62145000-62172200	Weak transcription	Colonic Mucosa	Colon
19	chr1:62145200-62167400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:62146200-62190200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:62146400-62166000	Weak transcription	Brain Angular Gyrus	brain
22	chr1:62146600-62164800	Weak transcription	Esophagus	oesophagus
23	chr1:62146600-62165200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:62146600-62166000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:62147000-62164400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr1:62147200-62164800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr1:62147600-62173400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:62148000-62164800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr1:62148400-62165200	Weak transcription	Fetal Kidney	kidney
30	chr1:62149600-62165000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:62150200-62164800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr1:62150200-62164800	Weak transcription	K562	blood
33	chr1:62150200-62165200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr1:62150200-62165200	Weak transcription	Fetal Lung	lung
35	chr1:62150200-62165600	Weak transcription	Small Intestine	intestine
36	chr1:62151400-62164400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr1:62152400-62175200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:62152800-62164400	Weak transcription	Lung	lung
39	chr1:62154200-62164400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:62154400-62165600	Weak transcription	HMEC	breast
41	chr1:62154800-62171600	Weak transcription	Fetal Heart	heart
42	chr1:62155400-62167400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr1:62155400-62167800	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr1:62155400-62167800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr1:62155400-62169000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr1:62158600-62189800	Weak transcription	Pancreas	Pancrea
47	chr1:62158800-62164800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr1:62159200-62167400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr1:62159200-62167600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr1:62159200-62167600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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