Variant report

Variant	rs115180962
Chromosome Location	chr9:102591385-102591386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102589376..102591940-chr9:102594219..102596621,2	MCF-7	breast:
2	chr9:102584717..102589672-chr9:102590692..102593827,7	K562	blood:
3	chr9:102587323..102589570-chr9:102589778..102591826,2	MCF-7	breast:
4	chr9:102590542..102592344-chr9:102611716..102613330,2	K562	blood:
5	chr9:102581904..102584388-chr9:102591286..102592818,2	K562	blood:

Variant related genes	Relation type
ENSG00000119508	Chromatin interaction
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv528025	chr9:102540386-102613672	Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv893622	chr9:102543355-102595685	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3433859	chr9:102589981-102592279	Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102586800-102609200	Weak transcription	Aorta	Aorta
2	chr9:102587000-102613800	Weak transcription	Hela-S3	cervix
3	chr9:102587400-102608200	Weak transcription	Psoas Muscle	Psoas
4	chr9:102588200-102591400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:102588200-102595400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:102589200-102592600	Strong transcription	Left Ventricle	heart
7	chr9:102589800-102592600	Strong transcription	Stomach Smooth Muscle	stomach
8	chr9:102590000-102592600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:102590200-102591400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr9:102590200-102591400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr9:102590200-102591400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr9:102590200-102591400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
13	chr9:102590200-102591600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr9:102590200-102592200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:102590200-102592400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:102590200-102592400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:102590200-102592600	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:102590400-102591400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:102590400-102591400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:102590400-102591400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr9:102590400-102591400	ZNF genes & repeats	Lung	lung
22	chr9:102590400-102591400	Enhancers	Spleen	Spleen
23	chr9:102590400-102591600	Strong transcription	NHLF	lung
24	chr9:102590400-102592000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:102590400-102609600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:102590600-102591400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:102590600-102591400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr9:102590600-102591400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr9:102590600-102591400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr9:102590600-102591400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr9:102590600-102591400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:102590600-102591400	Bivalent Enhancer	Primary B cells from cord blood	blood
33	chr9:102590600-102591400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:102590600-102591400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:102590600-102591400	Strong transcription	Right Ventricle	heart
36	chr9:102590600-102591400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
37	chr9:102590600-102591600	Bivalent Enhancer	Placenta	Placenta
38	chr9:102590600-102611200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr9:102590800-102591400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:102590800-102591400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:102590800-102591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:102590800-102591400	Enhancers	Pancreas	Pancrea
43	chr9:102591000-102591400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:102591000-102591400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
45	chr9:102591000-102591400	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
46	chr9:102591000-102591400	Bivalent Enhancer	Fetal Muscle Leg	muscle
47	chr9:102591000-102591400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
48	chr9:102591000-102591600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr9:102591000-102591600	Bivalent Enhancer	Liver	Liver
50	chr9:102591000-102591800	Weak transcription	Rectal Smooth Muscle	rectum

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