Variant report
| Variant | rs11518196 |
|---|---|
| Chromosome Location | chr11:10443922-10443923 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11042799 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11042800 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11042806 | 1.00[AMR][1000 genomes] |
| rs11042807 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11042810 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11042813 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12360830 | 1.00[AMR][1000 genomes] |
| rs12363993 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12789993 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12802491 | 1.00[AMR][1000 genomes] |
| rs12803441 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs34423417 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34827892 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs34972496 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs35027484 | 1.00[AMR][1000 genomes] |
| rs35526717 | 1.00[AMR][1000 genomes] |
| rs35548473 | 1.00[AMR][1000 genomes] |
| rs61890321 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61890324 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61891364 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430319 | chr11:10027543-10711224 | Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:10441800-10445400 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
