Variant report

Variant	rs1151826
Chromosome Location	chr12:120678926-120678927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120642171..120684465-chr12:120719749..120734210,267	K562	blood:
2	chr12:120631699..120641379-chr12:120675218..120683260,16	K562	blood:
3	chr12:120656223..120689871-chr12:120720394..120738112,311	MCF-7	breast:
4	chr12:120657004..120683911-chr12:120723753..120737731,232	K562	blood:
5	chr12:120678787..120681833-chr12:120700591..120705170,4	K562	blood:
6	chr12:120636299..120641088-chr12:120677088..120682968,7	K562	blood:

Variant related genes	Relation type
ENSG00000200795	Chromatin interaction
ENSG00000089154	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000089159	Chromatin interaction
ENSG00000255857	Chromatin interaction
ENSG00000089157	Chromatin interaction
ENSG00000123009	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10128770	0.86[AFR][1000 genomes]
rs11065052	0.83[AFR][1000 genomes]
rs1151821	0.96[ASN][1000 genomes]
rs1151822	0.93[ASN][1000 genomes]
rs1151823	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1151828	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1151829	0.81[AFR][1000 genomes]
rs1151831	1.00[AFR][1000 genomes]
rs1151833	1.00[ASN][1000 genomes]
rs1151834	0.90[AFR][1000 genomes]
rs1151835	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs1151836	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs1166788	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1166789	0.95[ASN][1000 genomes]
rs1179386	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs12298976	0.81[AFR][1000 genomes]
rs12319440	0.88[AFR][1000 genomes]
rs12322327	0.95[ASN][1000 genomes]
rs12580333	0.95[ASN][1000 genomes]
rs12580868	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs12582981	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1632619	1.00[ASN][1000 genomes]
rs1634820	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16950044	0.89[CHB][hapmap]
rs16950047	0.89[CHB][hapmap]
rs1732868	0.98[AFR][1000 genomes]
rs2239207	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs2283363	0.90[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs2524389	0.95[AFR][1000 genomes]
rs2701641	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs2701642	0.90[AFR][1000 genomes]
rs3847967	0.89[CHB][hapmap]
rs3847968	1.00[CHB][hapmap]
rs58777856	0.95[ASN][1000 genomes]
rs58919380	1.00[ASN][1000 genomes]
rs60134107	1.00[ASN][1000 genomes]
rs60282545	0.95[ASN][1000 genomes]
rs61633133	1.00[ASN][1000 genomes]
rs71541558	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases
2	nsv832530	chr12:120586069-120758175	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	484 gene(s)	inside rSNPs	diseases
3	nsv1035698	chr12:120645330-120777580	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
4	nsv1047447	chr12:120645330-120808621	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120665200-120692000	Enhancers	Placenta	Placenta
2	chr12:120665400-120682200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr12:120665600-120682200	Enhancers	Left Ventricle	heart
4	chr12:120666200-120686000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr12:120669800-120679400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr12:120669800-120687600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr12:120671800-120682800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:120672200-120680400	Enhancers	Fetal Thymus	thymus
9	chr12:120673400-120679000	Enhancers	Spleen	Spleen
10	chr12:120673800-120679000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:120673800-120682800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:120674000-120679200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:120674000-120679800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:120674200-120679200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:120674200-120679200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:120674200-120682800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:120674200-120687600	Weak transcription	Fetal Kidney	kidney
18	chr12:120674400-120683400	Genic enhancers	Primary T cells fromperipheralblood	blood
19	chr12:120675200-120680200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr12:120675200-120680400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr12:120675400-120679200	Enhancers	Psoas Muscle	Psoas
22	chr12:120675400-120682000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr12:120675800-120681000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr12:120675800-120682000	Genic enhancers	Fetal Muscle Leg	muscle
25	chr12:120675800-120685000	Weak transcription	Stomach Mucosa	stomach
26	chr12:120675800-120686400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr12:120676400-120679200	Enhancers	HUVEC	blood vessel
28	chr12:120676400-120679400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr12:120676400-120682600	Weak transcription	Ovary	ovary
30	chr12:120676400-120685000	Genic enhancers	NHEK	skin
31	chr12:120676400-120687400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr12:120676400-120699400	Weak transcription	Aorta	Aorta
33	chr12:120676600-120679600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr12:120676600-120679800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr12:120676600-120682800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr12:120676800-120679000	Weak transcription	Pancreas	Pancrea
37	chr12:120676800-120679400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr12:120676800-120679400	Weak transcription	K562	blood
39	chr12:120676800-120679600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:120676800-120680800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr12:120676800-120682000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr12:120676800-120682600	Weak transcription	NH-A	brain
43	chr12:120676800-120682800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr12:120676800-120685800	Weak transcription	Small Intestine	intestine
45	chr12:120677000-120679000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr12:120677000-120679200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr12:120677000-120679400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr12:120677000-120679600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:120677000-120681400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr12:120677000-120681800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links