Variant report

Variant	rs115206206
Chromosome Location	chr7:2882787-2882788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2869377..2877481-chr7:2880306..2885399,15	MCF-7	breast:
2	chr7:2801788..2804432-chr7:2882018..2884117,3	K562	blood:
3	chr7:2726313..2732670-chr7:2878755..2886203,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231357	Chromatin interaction
ENSG00000174945	Chromatin interaction
ENSG00000146535	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	esv3333602	chr7:2882776-2885274	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2851800-2882800	Weak transcription	Aorta	Aorta
2	chr7:2861400-2883000	Weak transcription	Thymus	Thymus
3	chr7:2864200-2882800	Weak transcription	Esophagus	oesophagus
4	chr7:2865600-2883000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:2872600-2882800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:2872800-2882800	Weak transcription	Liver	Liver
7	chr7:2874800-2882800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:2875000-2882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:2876200-2882800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:2877400-2882800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:2878000-2882800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:2878200-2882800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:2878400-2882800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:2879200-2882800	Weak transcription	Small Intestine	intestine
15	chr7:2879800-2883400	Enhancers	Fetal Heart	heart
16	chr7:2880800-2882800	Enhancers	Left Ventricle	heart
17	chr7:2881000-2882800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr7:2881000-2883000	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:2881000-2883000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
20	chr7:2881200-2882800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr7:2881200-2882800	Enhancers	Pancreas	Pancrea
22	chr7:2881200-2882800	Enhancers	Right Ventricle	heart
23	chr7:2881200-2883400	Enhancers	Fetal Brain Male	brain
24	chr7:2881400-2882800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr7:2881400-2883000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr7:2881600-2882800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:2881600-2883200	Enhancers	Spleen	Spleen
28	chr7:2881800-2882800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:2881800-2882800	Enhancers	Fetal Thymus	thymus
30	chr7:2881800-2882800	Enhancers	Lung	lung
31	chr7:2881800-2882800	Genic enhancers	NHEK	skin
32	chr7:2881800-2883000	Enhancers	Stomach Mucosa	stomach
33	chr7:2881800-2883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:2882000-2882800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr7:2882000-2882800	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr7:2882000-2883000	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr7:2882000-2883000	Enhancers	K562	blood
38	chr7:2882000-2883200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr7:2882000-2883400	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr7:2882000-2883400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:2882000-2883400	Flanking Active TSS	Placenta	Placenta
42	chr7:2882000-2883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:2882000-2884400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:2882000-2884600	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr7:2882200-2882800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr7:2882200-2882800	Enhancers	Primary hematopoietic stem cells	blood
47	chr7:2882200-2882800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr7:2882200-2882800	Enhancers	Fetal Muscle Leg	muscle
49	chr7:2882200-2882800	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr7:2882200-2883000	Enhancers	Primary B cells from cord blood	blood

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