Variant report

Variant	rs115225882
Chromosome Location	chr18:28679947-28679948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr18:28679636-28682676	K562	blood:	n/a	n/a
2	BHLHE40	chr18:28679783-28680484	K562	blood:	n/a	n/a
3	POLR2A	chr18:28679933-28682875	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr18:28679911-28682852	HepG2	liver:	n/a	n/a
5	JUND	chr18:28679315-28679985	HCT-116	colon:	n/a	n/a
6	KAP1	chr18:28679499-28680111	U2OS	brain:	n/a	n/a
7	POLR2A	chr18:28679824-28679994	HepG2	liver:	n/a	n/a
8	JUND	chr18:28679500-28680295	K562	blood:	n/a	chr18:28680058-28680066
9	MAX	chr18:28679849-28680049	HepG2	liver:	n/a	n/a
10	REST	chr18:28679865-28682873	H1-neurons	neurons:	n/a	chr18:28682133-28682146
11	KAP1	chr18:28679534-28680579	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28678241..28681068-chr18:28692831..28695270,2	K562	blood:
2	chr18:28663717..28665312-chr18:28679601..28681471,2	K562	blood:

Variant related genes	Relation type
ENSG00000265888	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388313	chr18:28583296-28693160	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3384119	chr18:28679654-28682652	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28640800-28680400	Weak transcription	Right Ventricle	heart
2	chr18:28642800-28680600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:28649200-28680800	Weak transcription	Gastric	stomach
4	chr18:28656600-28680200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr18:28669600-28680000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr18:28672000-28680200	Weak transcription	Brain Anterior Caudate	brain
7	chr18:28672800-28680000	Weak transcription	Liver	Liver
8	chr18:28676600-28680400	Weak transcription	Stomach Mucosa	stomach
9	chr18:28678600-28680200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr18:28678800-28680600	Enhancers	Brain Substantia Nigra	brain
11	chr18:28678800-28682400	Active TSS	Duodenum Mucosa	Duodenum
12	chr18:28679000-28680400	Enhancers	Fetal Heart	heart
13	chr18:28679000-28680400	Flanking Active TSS	K562	blood
14	chr18:28679200-28682800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr18:28679400-28680400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr18:28679600-28680000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr18:28679600-28680000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr18:28679600-28680000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr18:28679600-28680000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr18:28679600-28680000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr18:28679600-28680000	Weak transcription	Brain Hippocampus Middle	brain
22	chr18:28679600-28680000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr18:28679600-28680600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr18:28679800-28680000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr18:28679800-28680000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:28679800-28680000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr18:28679800-28680000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr18:28679800-28680000	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr18:28679800-28680000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr18:28679800-28680000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr18:28679800-28680000	Enhancers	Lung	lung
32	chr18:28679800-28680000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr18:28679800-28680200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr18:28679800-28680200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr18:28679800-28680200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr18:28679800-28680200	Flanking Active TSS	Colonic Mucosa	Colon
37	chr18:28679800-28680200	Bivalent Enhancer	Fetal Kidney	kidney
38	chr18:28679800-28680200	Enhancers	Placenta	Placenta
39	chr18:28679800-28680200	Enhancers	Right Atrium	heart
40	chr18:28679800-28680400	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr18:28679800-28680400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr18:28679800-28680400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr18:28679800-28680400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr18:28679800-28680400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr18:28679800-28680400	Flanking Active TSS	Fetal Intestine Large	intestine
46	chr18:28679800-28680400	Flanking Active TSS	Fetal Intestine Small	intestine
47	chr18:28679800-28680400	Enhancers	Left Ventricle	heart
48	chr18:28679800-28680400	Flanking Active TSS	Pancreas	Pancrea
49	chr18:28679800-28680400	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
50	chr18:28679800-28680400	Flanking Active TSS	HepG2	liver

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