Variant report

Variant	rs115241921
Chromosome Location	chr1:47271343-47271344
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47263957..47267463-chr1:47271063..47272982,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000142973	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001455	chr1:46828004-47326539	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv534950	chr1:46828004-47326539	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1013048	chr1:47132831-47377364	Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv534955	chr1:47132831-47377364	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1011086	chr1:47259078-47305191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv870792	chr1:47259138-47272185	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv870538	chr1:47259138-47309265	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1010063	chr1:47264205-47285118	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv546165	chr1:47266590-47272785	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1004143	chr1:47270942-47321982	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47265400-47271400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:47265600-47271800	Weak transcription	Spleen	Spleen
3	chr1:47265600-47279200	Weak transcription	Gastric	stomach
4	chr1:47266400-47273800	Enhancers	Placenta	Placenta
5	chr1:47266800-47271600	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:47267800-47273000	Enhancers	Esophagus	oesophagus
7	chr1:47267800-47273600	Enhancers	Lung	lung
8	chr1:47268000-47271600	Weak transcription	Fetal Intestine Large	intestine
9	chr1:47268400-47273600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:47269800-47271600	Enhancers	Right Atrium	heart
11	chr1:47269800-47271800	Enhancers	Stomach Smooth Muscle	stomach
12	chr1:47269800-47272400	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr1:47269800-47273600	Enhancers	Left Ventricle	heart
14	chr1:47270000-47271600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr1:47270400-47271400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:47270600-47273600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:47270800-47272000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:47271000-47271600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:47271000-47272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:47271000-47272000	Weak transcription	Stomach Mucosa	stomach
21	chr1:47271200-47272000	Enhancers	Duodenum Mucosa	Duodenum
22	chr1:47271200-47273000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:47271200-47273000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr1:47271200-47273200	Weak transcription	Right Ventricle	heart

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