Variant report

Variant	rs115320754
Chromosome Location	chr7:55794968-55794969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:35)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:35 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr7:55794805-55795095	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr7:55794900-55795050	SAEC	small airway:	n/a	n/a
3	CTCF	chr7:55794920-55795070	NHEK	skin:	n/a	n/a
4	CTCF	chr7:55794966-55795003	HepG2	liver:	n/a	n/a
5	RAD21	chr7:55794821-55795160	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr7:55794930-55795046	K562	blood:	n/a	n/a
7	CTCF	chr7:55794930-55795035	MCF-7	breast:	n/a	n/a
8	CTCF	chr7:55794920-55795052	MCF-7	breast:	n/a	n/a
9	CTCF	chr7:55794900-55795050	HMF	breast:	n/a	n/a
10	RAD21	chr7:55794850-55795026	SK-N-SH_RA	brain:	n/a	n/a
11	CTCF	chr7:55794900-55795050	AG10803	skin:	n/a	n/a
12	CTCF	chr7:55794860-55795010	AG09309	skin:	n/a	n/a
13	CTCF	chr7:55794900-55795050	NHEK	skin:	n/a	n/a
14	CTCF	chr7:55794886-55795051	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr7:55794877-55795074	NHEK	skin:	n/a	n/a
16	CTCF	chr7:55794880-55795030	HFF	foreskin:	n/a	n/a
17	CTCF	chr7:55794900-55795050	GM12864	blood:	n/a	n/a
18	CTCF	chr7:55794930-55795071	GM12878	blood:	n/a	n/a
19	RAD21	chr7:55794825-55795070	HepG2	liver:	n/a	n/a
20	CTCF	chr7:55794936-55795029	GM12878	blood:	n/a	n/a
21	CTCF	chr7:55794880-55795030	HMEC	breast:	n/a	n/a
22	CTCF	chr7:55794900-55795050	GM06990	blood:	n/a	n/a
23	CTCF	chr7:55794900-55795050	GM12873	blood:	n/a	n/a
24	CTCF	chr7:55794940-55795090	HMEC	breast:	n/a	n/a
25	CTCF	chr7:55794878-55795024	HepG2	liver:	n/a	n/a
26	GATA3	chr7:55794798-55795151	T-47D	breast:	n/a	n/a
27	CTCF	chr7:55794900-55795050	MCF-7	breast:	n/a	n/a
28	CTCF	chr7:55794880-55795030	HEEpiC	esophagus:	n/a	n/a
29	CTCF	chr7:55794880-55795030	NB4	blood:	n/a	n/a
30	CTCF	chr7:55794817-55795120	K562	blood:	n/a	n/a
31	RAD21	chr7:55794873-55795125	SK-N-SH_RA	brain:	n/a	n/a
32	RCOR1	chr7:55794888-55795003	K562	blood:	n/a	n/a
33	RAD21	chr7:55794870-55795110	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr7:55794925-55795046	Hela-S3	cervix:	n/a	n/a
35	CTCF	chr7:55794952-55795001	GM19239	blood:	n/a	n/a

No data

Variant related genes	Relation type
SUMO2P3	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv427782	chr7:55703073-56010314	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv888063	chr7:55728476-55899496	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv469612	chr7:55752394-55876163	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv482609	chr7:55752394-55876163	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv1811149	chr7:55790528-55798357	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv1813483	chr7:55790528-55798357	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv1805986	chr7:55790582-55798357	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv1806072	chr7:55790582-55798357	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv970481	chr7:55791876-55816398	Enhancers Genic enhancers Weak transcription Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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