Variant report

Variant	rs1153333
Chromosome Location	chr21:15685984-15685985
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1012999	0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1153303	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1153307	0.87[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1153316	0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1153317	0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1153321	0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1153323	0.95[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1153324	0.95[CEU][hapmap];0.94[CHB][hapmap];0.80[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1153325	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1153327	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1153328	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1153329	0.85[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1153331	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1297115	0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1297123	0.86[ASN][1000 genomes]
rs1297151	0.87[CEU][hapmap]
rs2403770	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs2822556	0.87[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4817081	0.84[JPT][hapmap]
rs887768	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs887773	0.95[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066930	chr21:15626232-15724630	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv459095	chr21:15626660-15698808	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv587044	chr21:15626660-15698808	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv470878	chr21:15630812-15698808	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1064554	chr21:15676222-15809321	Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15678800-15688600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr21:15681200-15691000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr21:15684600-15686000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr21:15685400-15686000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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