Variant report

Variant	rs115344098
Chromosome Location	chr3:119032426-119032427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119011664..119014581-chr3:119029307..119032629,3	MCF-7	breast:
2	chr3:118958216..118961289-chr3:119031981..119034606,3	K562	blood:
3	chr3:119032410..119034718-chr3:119043849..119046722,2	K562	blood:
4	chr3:119028893..119037158-chr3:119037697..119043591,18	MCF-7	breast:
5	chr3:118969877..118972068-chr3:119030685..119033173,2	K562	blood:

Variant related genes	Relation type
ENSG00000121578	Chromatin interaction
ENSG00000241155	Chromatin interaction
ENSG00000031081	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv965394	chr3:119032370-119038786	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119014200-119032800	Weak transcription	Pancreas	Pancrea
2	chr3:119015000-119041200	Weak transcription	Aorta	Aorta
3	chr3:119015200-119041000	Weak transcription	Fetal Kidney	kidney
4	chr3:119016000-119035400	Weak transcription	Fetal Brain Male	brain
5	chr3:119016000-119041000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:119016400-119040800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:119016400-119041000	Weak transcription	Fetal Intestine Small	intestine
8	chr3:119017400-119040600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:119018800-119032800	Weak transcription	Thymus	Thymus
10	chr3:119019200-119040800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:119020400-119040600	Weak transcription	Esophagus	oesophagus
12	chr3:119021200-119041000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:119021200-119041000	Weak transcription	Fetal Thymus	thymus
14	chr3:119022200-119040800	Weak transcription	Brain Angular Gyrus	brain
15	chr3:119022400-119040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:119022400-119041000	Weak transcription	Primary B cells from cord blood	blood
17	chr3:119022400-119041000	Weak transcription	Fetal Intestine Large	intestine
18	chr3:119022400-119041200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:119022600-119032600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:119022600-119040600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr3:119023600-119032800	Weak transcription	Ovary	ovary
22	chr3:119024400-119040600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:119024800-119032600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:119024800-119032800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:119024800-119040600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:119024800-119041000	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:119024800-119041000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr3:119025000-119040800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:119026800-119034600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:119027600-119033800	Weak transcription	Brain Substantia Nigra	brain
31	chr3:119027600-119041000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:119028200-119032800	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:119029400-119039000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr3:119029600-119033000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:119029600-119041200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:119029800-119033200	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:119030000-119041000	Weak transcription	Brain Anterior Caudate	brain
38	chr3:119030000-119041200	Weak transcription	Gastric	stomach
39	chr3:119030200-119038800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:119030200-119041000	Weak transcription	Colonic Mucosa	Colon
41	chr3:119030600-119032800	Weak transcription	Placenta	Placenta
42	chr3:119030600-119032800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:119030600-119032800	Weak transcription	Spleen	Spleen
44	chr3:119030600-119033000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr3:119030600-119039000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr3:119030800-119032600	Weak transcription	Fetal Lung	lung
47	chr3:119030800-119034400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:119030800-119038600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:119030800-119040400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr3:119030800-119040800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links