Variant report

Variant	rs115374841
Chromosome Location	chr10:116528777-116528778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116526600-116528800	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr10:116526800-116528800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr10:116527200-116528800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:116527600-116528800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:116527600-116528800	Active TSS	Brain Cingulate Gyrus	brain
6	chr10:116528400-116528800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:116528400-116528800	Enhancers	Fetal Heart	heart
8	chr10:116528400-116529000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr10:116528400-116531800	Weak transcription	HUVEC	blood vessel
10	chr10:116528400-116531800	Weak transcription	NH-A	brain
11	chr10:116528600-116528800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:116528600-116528800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:116528600-116528800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
14	chr10:116528600-116528800	Enhancers	Duodenum Mucosa	Duodenum
15	chr10:116528600-116528800	Bivalent Enhancer	Fetal Intestine Small	intestine
16	chr10:116528600-116539600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:116528600-116540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links