Variant report

Variant	rs11537991
Chromosome Location	chr11:45954281-45954282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45905425..45907108-chr11:45954120..45957048,2	K562	blood:
2	chr11:45952006..45954841-chr11:45955334..45958699,4	K562	blood:
3	chr11:45952509..45955320-chr11:46263473..46266230,2	MCF-7	breast:
4	chr11:45952614..45954812-chr11:45958879..45961272,2	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17787346	1.00[MEX][hapmap]
rs2271851	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1805505	chr11:45912324-45956109	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45944800-45955200	Weak transcription	Ovary	ovary
2	chr11:45945200-45954400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:45945200-45955000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:45945200-45955200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:45945200-45969400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:45948200-45954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:45948800-45957000	Weak transcription	NH-A	brain
8	chr11:45949200-45954800	Strong transcription	Fetal Stomach	stomach
9	chr11:45949200-45956400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:45949400-45957000	Enhancers	HMEC	breast
11	chr11:45949600-45956600	Weak transcription	NHDF-Ad	bronchial
12	chr11:45949800-45956800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:45950000-45954600	Weak transcription	Brain Substantia Nigra	brain
14	chr11:45950200-45956200	Weak transcription	Fetal Lung	lung
15	chr11:45950200-45960000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:45950600-45955600	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr11:45950600-45955600	Weak transcription	Brain Angular Gyrus	brain
18	chr11:45950800-45955200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:45951000-45955200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:45951400-45955800	Weak transcription	HepG2	liver
21	chr11:45951600-45954800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:45951600-45959600	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr11:45951800-45960000	Strong transcription	Aorta	Aorta
24	chr11:45951800-45960200	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:45952000-45954400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:45952000-45967000	Weak transcription	Fetal Kidney	kidney
27	chr11:45952200-45954600	Weak transcription	Colonic Mucosa	Colon
28	chr11:45952200-45955200	Weak transcription	Hela-S3	cervix
29	chr11:45952200-45955800	Strong transcription	Spleen	Spleen
30	chr11:45952200-45955800	Weak transcription	A549	lung
31	chr11:45952200-45956200	Weak transcription	K562	blood
32	chr11:45952400-45954600	Strong transcription	Brain Germinal Matrix	brain
33	chr11:45952400-45954600	Weak transcription	Fetal Brain Male	brain
34	chr11:45952400-45954600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr11:45952400-45954800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:45952400-45956800	Weak transcription	Small Intestine	intestine
37	chr11:45952400-45958200	Weak transcription	Psoas Muscle	Psoas
38	chr11:45952400-45959800	Strong transcription	Fetal Intestine Small	intestine
39	chr11:45952400-45960200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:45952400-45960200	Strong transcription	Fetal Muscle Leg	muscle
41	chr11:45952400-45996200	Weak transcription	Stomach Mucosa	stomach
42	chr11:45952800-45954400	Genic enhancers	Primary monocytes fromperipheralblood	blood
43	chr11:45952800-45954400	Genic enhancers	Monocytes-CD14+_RO01746	blood
44	chr11:45952800-45954800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr11:45952800-45957000	Genic enhancers	Placenta	Placenta
46	chr11:45952800-45957200	Genic enhancers	Fetal Thymus	thymus
47	chr11:45952800-45957800	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:45952800-45959800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:45952800-45960200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:45952800-45960200	Strong transcription	Duodenum Mucosa	Duodenum

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