Variant report

Variant	rs11539810
Chromosome Location	chr11:75133765-75133766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75124911..75127716-chr11:75131306..75134376,3	K562	blood:
2	chr11:75133120..75135627-chr11:75156847..75159268,2	K562	blood:
3	chr11:75132815..75134620-chr11:75156705..75159268,2	K562	blood:
4	chr11:75109263..75112751-chr11:75131805..75136633,9	MCF-7	breast:
5	chr11:75122268..75124877-chr11:75130912..75134393,4	K562	blood:
6	chr11:75132514..75134087-chr11:75134186..75136176,2	K562	blood:
7	chr11:74991174..74992022-chr11:75133209..75133801,2	MCF-7	breast:
8	chr11:75050045..75052977-chr11:75131615..75134854,3	MCF-7	breast:
9	chr11:75116817..75118910-chr11:75131557..75134243,2	K562	blood:
10	chr11:75125667..75127320-chr11:75132876..75135732,2	K562	blood:
11	chr11:74970676..74972225-chr11:75133212..75135335,2	K562	blood:
12	chr11:75123123..75124877-chr11:75131812..75133921,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000254429	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12272818	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12274033	0.90[JPT][hapmap]
rs12289289	0.89[GIH][hapmap];0.90[JPT][hapmap]
rs12290287	0.88[JPT][hapmap]
rs12292210	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12293207	0.90[JPT][hapmap]
rs12789498	0.83[MKK][hapmap]
rs12795298	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12798081	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3094303	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3094304	1.00[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3133186	1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3133187	1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34503349	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34593568	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35378921	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv1799276	chr11:75104200-75135434	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
4	nsv897921	chr11:75115893-75147661	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897922	chr11:75116733-75147661	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
7	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75117000-75135200	Weak transcription	Right Ventricle	heart
2	chr11:75117400-75139000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:75118200-75139000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:75118200-75139600	Weak transcription	Small Intestine	intestine
5	chr11:75119400-75139800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:75120400-75134200	Weak transcription	Right Atrium	heart
7	chr11:75122800-75134800	Strong transcription	Thymus	Thymus
8	chr11:75122800-75135600	Strong transcription	Primary T cells from cord blood	blood
9	chr11:75123400-75138800	Weak transcription	Fetal Kidney	kidney
10	chr11:75123400-75140000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:75123600-75139000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:75125200-75136200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:75126200-75133800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr11:75126200-75139400	Weak transcription	Esophagus	oesophagus
15	chr11:75126400-75133800	Weak transcription	Colonic Mucosa	Colon
16	chr11:75126400-75136400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:75126400-75138000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:75126400-75139400	Weak transcription	Ovary	ovary
19	chr11:75126400-75139600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:75126400-75140600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:75126600-75138200	Weak transcription	Left Ventricle	heart
22	chr11:75126600-75139000	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:75126600-75139200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:75127600-75135600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:75127600-75137400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:75128000-75138800	Weak transcription	GM12878-XiMat	blood
27	chr11:75128200-75135600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:75128200-75138800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:75128400-75135200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:75129200-75136400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:75129400-75141200	Weak transcription	Aorta	Aorta
32	chr11:75130200-75139000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:75130400-75139000	Weak transcription	HMEC	breast
34	chr11:75130600-75133800	Weak transcription	HSMM	muscle
35	chr11:75130800-75135000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:75131000-75134400	Genic enhancers	Fetal Intestine Small	intestine
37	chr11:75131000-75135000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:75131000-75135000	Genic enhancers	Fetal Muscle Trunk	muscle
39	chr11:75131000-75139000	Weak transcription	NH-A	brain
40	chr11:75131200-75134200	Enhancers	Pancreas	Pancrea
41	chr11:75131200-75134400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr11:75131200-75134600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:75131200-75134800	Strong transcription	Fetal Thymus	thymus
44	chr11:75131200-75134800	Enhancers	Stomach Mucosa	stomach
45	chr11:75131200-75135000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:75131200-75135000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:75131200-75135600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:75131200-75138800	Weak transcription	HUVEC	blood vessel
49	chr11:75131200-75139400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:75131400-75133800	Strong transcription	iPS-15b Cell Line	embryonic stem cell

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