Variant report

Variant	rs1154058
Chromosome Location	chr8:4295327-4295328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11136741	1.00[CHB][hapmap]
rs1154050	0.82[YRI][hapmap]
rs1154056	0.85[YRI][hapmap]
rs1154061	0.85[YRI][hapmap]
rs1154063	1.00[YRI][hapmap]
rs1154066	1.00[AMR][1000 genomes]
rs1154073	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs1154075	1.00[AMR][1000 genomes]
rs1154077	1.00[AMR][1000 genomes]
rs1154079	1.00[AMR][1000 genomes]
rs11994346	1.00[CHB][hapmap]
rs1217538	1.00[AMR][1000 genomes]
rs1217545	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1217652	0.85[YRI][hapmap]
rs1217678	1.00[AMR][1000 genomes]
rs1217679	1.00[AMR][1000 genomes]
rs1236991	1.00[AMR][1000 genomes]
rs1238059	1.00[AMR][1000 genomes]
rs13258474	1.00[CHB][hapmap]
rs1617848	1.00[YRI][hapmap]
rs1652554	1.00[AMR][1000 genomes]
rs1725127	1.00[AMR][1000 genomes]
rs2915064	1.00[AMR][1000 genomes]
rs2918047	0.82[YRI][hapmap]
rs2959178	1.00[AMR][1000 genomes]
rs7832757	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2752255	chr8:4226976-4328216	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv889949	chr8:4246903-4302217	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1024293	chr8:4255656-4309691	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv539385	chr8:4255656-4309691	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1030239	chr8:4282088-4305779	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv1032820	chr8:4282334-4306330	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv889950	chr8:4282618-4320656	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv889951	chr8:4283673-4317346	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv889952	chr8:4283673-4319714	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv889953	chr8:4283673-4320342	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv1033942	chr8:4289483-4350738	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv539387	chr8:4289483-4350738	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4295200-4296000	Enhancers	Cortex derived primary cultured neurospheres	brain

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