The 2.0 version of rSNPBase

Variant report

Variant rs115427283
Chromosome Location chr6:5729020-5729021
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5717600-5729600 Weak transcription Brain Substantia Nigra brain
2 chr6:5718000-5729200 Weak transcription NHEK skin
3 chr6:5723000-5744200 Weak transcription Right Ventricle heart
4 chr6:5724200-5729200 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr6:5724600-5729200 Weak transcription H9 Cell Line embryonic stem cell
6 chr6:5724600-5729200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr6:5724600-5729200 Weak transcription NH-A brain
8 chr6:5724800-5729200 Weak transcription Osteobl bone
9 chr6:5724800-5729400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr6:5725000-5729800 Enhancers Primary B cells from cord blood blood
11 chr6:5725000-5730000 Enhancers Primary B cells from peripheral blood blood
12 chr6:5725000-5731600 Weak transcription Colonic Mucosa Colon
13 chr6:5725000-5737000 Weak transcription Primary T cells from cord blood blood
14 chr6:5725200-5749200 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr6:5726000-5749400 Weak transcription Fetal Intestine Small intestine
16 chr6:5727000-5729200 Enhancers HSMM muscle
17 chr6:5727000-5762400 Weak transcription Stomach Smooth Muscle stomach
18 chr6:5727200-5729800 Enhancers Fetal Muscle Leg muscle
19 chr6:5727200-5731400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr6:5727600-5729200 Weak transcription Fetal Muscle Trunk muscle
21 chr6:5727800-5729600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
22 chr6:5728000-5729200 Enhancers Brain Inferior Temporal Lobe brain
23 chr6:5728000-5729400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr6:5728000-5729800 Enhancers Fetal Brain Male brain
25 chr6:5728000-5730200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr6:5728000-5730200 Enhancers Fetal Brain Female brain
27 chr6:5728000-5730800 Enhancers Brain Germinal Matrix brain
28 chr6:5728200-5729200 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr6:5728200-5729400 Enhancers Cortex derived primary cultured neurospheres brain
30 chr6:5728200-5730400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr6:5728400-5731400 Weak transcription Fetal Thymus thymus
32 chr6:5728600-5731400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr6:5728800-5729400 Enhancers HUES6 Cell Line embryonic stem cell
34 chr6:5728800-5729400 Flanking Active TSS GM12878-XiMat blood
35 chr6:5728800-5729600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
36 chr6:5728800-5729800 Enhancers HUES64 Cell Line embryonic stem cell
37 chr6:5728800-5729800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
38 chr6:5728800-5729800 Enhancers HMEC breast
39 chr6:5729000-5729200 Enhancers Fetal Stomach stomach
40 chr6:5729000-5729600 Enhancers H1 Cell Line embryonic stem cell
41 chr6:5729000-5729600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr6:5729000-5729600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr6:5729000-5729600 Enhancers Esophagus oesophagus
44 chr6:5729000-5729600 Enhancers Spleen Spleen
45 chr6:5729000-5729800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr6:5729000-5729800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr6:5729000-5729800 Enhancers Left Ventricle heart
48 chr6:5729000-5729800 Enhancers Lung lung
49 chr6:5729000-5730000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr6:5729000-5730000 Enhancers HUVEC blood vessel

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Last update: Aug 31, 2015