Variant report

Variant	rs1154277
Chromosome Location	chr3:112486235-112486236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112483531..112486367-chr3:112489660..112491750,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1249920	0.92[AFR][1000 genomes]
rs3846045	1.00[AFR][1000 genomes]
rs7427914	0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs820549	0.85[AFR][1000 genomes]
rs820550	0.92[AFR][1000 genomes]
rs820554	0.91[YRI][hapmap]
rs820556	0.82[YRI][hapmap]
rs820558	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112468000-112488200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112477600-112488000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:112478600-112487600	Weak transcription	NHDF-Ad	bronchial
4	chr3:112480200-112488600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:112480800-112488800	Weak transcription	HUVEC	blood vessel
6	chr3:112481000-112488200	Weak transcription	NH-A	brain
7	chr3:112484200-112486600	Enhancers	Stomach Mucosa	stomach
8	chr3:112484200-112489400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:112484800-112488000	Weak transcription	NHLF	lung
10	chr3:112485000-112488000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:112485400-112486400	Enhancers	A549	lung
12	chr3:112485400-112486600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:112485400-112486600	Enhancers	GM12878-XiMat	blood
14	chr3:112485400-112486600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr3:112485400-112486800	Enhancers	Primary B cells from cord blood	blood
16	chr3:112485400-112487400	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:112485600-112486400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:112485600-112486400	Enhancers	K562	blood
19	chr3:112485600-112486600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:112485800-112486400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr3:112485800-112494400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:112486000-112486600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:112486000-112486600	Enhancers	Spleen	Spleen
24	chr3:112486200-112487000	Enhancers	Osteobl	bone
25	chr3:112486200-112488200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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