Variant report

Variant	rs11545237
Chromosome Location	chr17:38244654-38244655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38229470..38233306-chr17:38242211..38244708,3	K562	blood:
2	chr17:38241415..38245258-chr17:38262802..38266509,3	K562	blood:
3	chr17:38243230..38245617-chr17:38247289..38249531,2	MCF-7	breast:
4	chr17:38243326..38246532-chr17:38277447..38279399,3	K562	blood:

Variant related genes	Relation type
ENSG00000188895	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28623289	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908221	chr17:38216522-38289003	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38232600-38244800	Strong transcription	Fetal Stomach	stomach
2	chr17:38232800-38248000	Weak transcription	Psoas Muscle	Psoas
3	chr17:38232800-38249400	Weak transcription	Hela-S3	cervix
4	chr17:38233000-38245400	Strong transcription	Fetal Intestine Small	intestine
5	chr17:38233200-38245400	Strong transcription	Fetal Intestine Large	intestine
6	chr17:38234600-38249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr17:38238600-38245400	Strong transcription	Fetal Muscle Leg	muscle
8	chr17:38239400-38248000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr17:38239600-38245800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr17:38239600-38246400	Strong transcription	Fetal Brain Female	brain
11	chr17:38239600-38246800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr17:38239600-38247000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr17:38239600-38247600	Strong transcription	Brain Hippocampus Middle	brain
14	chr17:38239600-38250000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr17:38239600-38250600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr17:38239600-38251200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:38239600-38252000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:38239800-38246000	Strong transcription	Adipose Nuclei	Adipose
19	chr17:38239800-38246000	Strong transcription	Aorta	Aorta
20	chr17:38239800-38246000	Strong transcription	Placenta	Placenta
21	chr17:38239800-38246200	Strong transcription	Primary B cells from cord blood	blood
22	chr17:38239800-38246200	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr17:38239800-38246200	Strong transcription	Osteobl	bone
24	chr17:38239800-38246600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr17:38239800-38246600	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr17:38239800-38246600	Strong transcription	Pancreas	Pancrea
27	chr17:38239800-38246600	Strong transcription	NHLF	lung
28	chr17:38239800-38246800	Strong transcription	Primary T cells from cord blood	blood
29	chr17:38239800-38246800	Strong transcription	Ovary	ovary
30	chr17:38239800-38246800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr17:38239800-38246800	Strong transcription	Dnd41	blood
32	chr17:38239800-38247000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr17:38239800-38247000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr17:38239800-38247000	Strong transcription	Brain Angular Gyrus	brain
35	chr17:38239800-38247000	Strong transcription	Brain Anterior Caudate	brain
36	chr17:38239800-38247600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr17:38239800-38248000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr17:38239800-38248200	Strong transcription	Fetal Thymus	thymus
39	chr17:38239800-38249200	Strong transcription	Spleen	Spleen
40	chr17:38239800-38249600	Strong transcription	Colonic Mucosa	Colon
41	chr17:38239800-38250200	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr17:38239800-38250200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr17:38239800-38250200	Strong transcription	Brain Germinal Matrix	brain
44	chr17:38239800-38250400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr17:38239800-38250600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr17:38239800-38251600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr17:38239800-38251800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr17:38239800-38252200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr17:38239800-38253600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr17:38240000-38245000	Strong transcription	K562	blood

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