Variant report

Variant	rs1154780
Chromosome Location	chr7:78161376-78161377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10447824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1468774	0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1468775	0.86[ASN][1000 genomes]
rs1468776	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs4730343	0.81[JPT][hapmap]
rs4730345	0.81[JPT][hapmap]
rs6466258	0.82[JPT][hapmap]
rs6970459	0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs7806320	0.91[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78138400-78161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78157000-78172000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:78158800-78169200	Weak transcription	Aorta	Aorta
4	chr7:78158800-78172000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:78158800-78191000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:78160000-78161600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:78160400-78161400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:78160400-78161400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:78160400-78161600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:78160400-78161600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:78160400-78164800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:78160400-78170200	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:78160400-78170600	Weak transcription	Brain Anterior Caudate	brain
14	chr7:78160800-78161800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:78161000-78162000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:78161200-78161400	Enhancers	Brain Angular Gyrus	brain
17	chr7:78161200-78162000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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